Zengtudor/DNASequence
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

update

Browse Source
This commit is contained in:
Zengtudor 2024-09-21 23:53:49 +08:00
parent ec99499e46
commit 913d108111
1 changed files with 8 additions and 3 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

11
README.md
View File

@ -1,6 +1,7 @@
# DNASequence # DNASequence
[提问者问题原文链接](https://www.zhihu.com/question/36143261/answer/3624848144) [提问者问题原文链接](https://www.zhihu.com/question/36143261/answer/3624848144)
## 关于如何构建本项目 ## 关于如何构建本项目
> 请确保安装了构建工具xmake，和任意C++构建工具并将路径添加到了PATH目录 > 请确保安装了构建工具xmake，和任意C++构建工具并将路径添加到了PATH目录
@ -9,7 +10,7 @@
```bash ```bash
#编译 -v 表示 verbose 输出详细编译信息具体说明去上面的xmake链接看看 #编译 -v 表示 verbose 输出详细编译信息具体说明去上面的xmake链接看看
xmake b -v dna_pybind xmake b -v
# 运行 # 运行
xmake r xmake r
@ -17,7 +18,6 @@ xmake r
xmake project -k vsxmake xmake project -k vsxmake
``` ```
## 代码逻辑介绍 ## 代码逻辑介绍
DNASequence处理 DNASequence处理
@ -34,8 +34,11 @@ ACGTACACATTGCTGTCTGCTGAACCACCTAG
@SRR13280199.1 2 length=32 @SRR13280199.1 2 length=32
ACGTACACATTGCTGTCTGCTGAACCACCTAG ACGTACACATTGCTGTCTGCTGAACCACCTAG
``` ```
## pybind支持 ## pybind支持
>在编译完文件后会得到dna.pyd文件和python提示文件dna.pyi，用法如下
> 在编译完文件后会得到dna.pyd文件和python提示文件dna.pyi，用法如下
```python ```python
import dna import dna
@ -43,6 +46,7 @@ help(dna)
dna.dna_reverse("filteredReads.txt","reversedSequence.txt") dna.dna_reverse("filteredReads.txt","reversedSequence.txt")
``` ```
``` ```
Help on module dna: Help on module dna:
@ -74,6 +78,7 @@ buf_len : 897963094
[Timer: chunk_id:[1]] Stop timing , used 3185ms [Timer: chunk_id:[1]] Stop timing , used 3185ms
[Timer: All spent] Stop timing , used 3186ms [Timer: All spent] Stop timing , used 3186ms
``` ```
# 注意！ # 注意！
> 输入的时候麻烦最后一行的换行别删 > 输入的时候麻烦最后一行的换行别删