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view for numpy arrays (#987)
* reshape * more tests * Update numpy.h * Update test_numpy_array.py * array view * test * Update test_numpy_array.cpp * Update numpy.h * Update numpy.h * Update test_numpy_array.cpp * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix merge bug * Make clang-tidy happy * Add xfail for PyPy * Fix casting issue * Fix formatting * Apply clang-tidy * Address reviews on additional tests * Fix ordering * Do a little more reordering * Fix typo * Try improving tests * Fix error in reshape * Add one more reshape test * Fix bugs and add test * Relax test * streamlining new tests; removing a few stray msg * Fix style revert * Fix clang-tidy * Misc tweaks: * Comment: matching style in file (///), responsibility sentence, consistent punctuation. * Replacing `unsigned char` with `uint8_t` for max consistency. * Removing `1` from `array_view1` because there is only one. * Partial clang-format-diff. Co-authored-by: ncullen93 <ncullen.th@dartmouth.edu> Co-authored-by: NC Cullen <nicholas.c.cullen.th@dartmouth.edu> Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Ralf Grosse-Kunstleve <rwgk@google.com>
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@ -199,6 +199,7 @@ struct npy_api {
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int (*PyArray_SetBaseObject_)(PyObject *, PyObject *);
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int (*PyArray_SetBaseObject_)(PyObject *, PyObject *);
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PyObject* (*PyArray_Resize_)(PyObject*, PyArray_Dims*, int, int);
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PyObject* (*PyArray_Resize_)(PyObject*, PyArray_Dims*, int, int);
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PyObject* (*PyArray_Newshape_)(PyObject*, PyArray_Dims*, int);
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PyObject* (*PyArray_Newshape_)(PyObject*, PyArray_Dims*, int);
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PyObject* (*PyArray_View_)(PyObject*, PyObject*, PyObject*);
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private:
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private:
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enum functions {
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enum functions {
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@ -216,6 +217,7 @@ private:
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API_PyArray_DescrNewFromType = 96,
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API_PyArray_DescrNewFromType = 96,
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API_PyArray_Newshape = 135,
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API_PyArray_Newshape = 135,
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API_PyArray_Squeeze = 136,
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API_PyArray_Squeeze = 136,
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API_PyArray_View = 137,
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API_PyArray_DescrConverter = 174,
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API_PyArray_DescrConverter = 174,
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API_PyArray_EquivTypes = 182,
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API_PyArray_EquivTypes = 182,
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API_PyArray_GetArrayParamsFromObject = 278,
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API_PyArray_GetArrayParamsFromObject = 278,
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@ -248,6 +250,7 @@ private:
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DECL_NPY_API(PyArray_DescrNewFromType);
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DECL_NPY_API(PyArray_DescrNewFromType);
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DECL_NPY_API(PyArray_Newshape);
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DECL_NPY_API(PyArray_Newshape);
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DECL_NPY_API(PyArray_Squeeze);
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DECL_NPY_API(PyArray_Squeeze);
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DECL_NPY_API(PyArray_View);
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DECL_NPY_API(PyArray_DescrConverter);
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DECL_NPY_API(PyArray_DescrConverter);
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DECL_NPY_API(PyArray_EquivTypes);
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DECL_NPY_API(PyArray_EquivTypes);
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DECL_NPY_API(PyArray_GetArrayParamsFromObject);
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DECL_NPY_API(PyArray_GetArrayParamsFromObject);
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@ -802,6 +805,21 @@ public:
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return new_array;
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return new_array;
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}
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}
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/// Create a view of an array in a different data type.
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/// This function may fundamentally reinterpret the data in the array.
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/// It is the responsibility of the caller to ensure that this is safe.
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/// Only supports the `dtype` argument, the `type` argument is omitted,
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/// to be added as needed.
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array view(const std::string &dtype) {
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auto &api = detail::npy_api::get();
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auto new_view = reinterpret_steal<array>(api.PyArray_View_(
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m_ptr, dtype::from_args(pybind11::str(dtype)).release().ptr(), nullptr));
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if (!new_view) {
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throw error_already_set();
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}
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return new_view;
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}
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/// Ensure that the argument is a NumPy array
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/// Ensure that the argument is a NumPy array
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/// In case of an error, nullptr is returned and the Python error is cleared.
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/// In case of an error, nullptr is returned and the Python error is cleared.
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static array ensure(handle h, int ExtraFlags = 0) {
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static array ensure(handle h, int ExtraFlags = 0) {
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@ -405,6 +405,9 @@ TEST_SUBMODULE(numpy_array, sm) {
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return a;
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return a;
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});
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});
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sm.def("array_view",
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[](py::array_t<uint8_t> a, const std::string &dtype) { return a.view(dtype); });
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sm.def("reshape_initializer_list", [](py::array_t<int> a, size_t N, size_t M, size_t O) {
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sm.def("reshape_initializer_list", [](py::array_t<int> a, size_t N, size_t M, size_t O) {
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return a.reshape({N, M, O});
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return a.reshape({N, M, O});
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});
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});
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@ -476,6 +476,21 @@ def test_array_create_and_resize():
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assert np.all(a == 42.0)
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assert np.all(a == 42.0)
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def test_array_view():
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a = np.ones(100 * 4).astype("uint8")
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a_float_view = m.array_view(a, "float32")
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assert a_float_view.shape == (100 * 1,) # 1 / 4 bytes = 8 / 32
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a_int16_view = m.array_view(a, "int16") # 1 / 2 bytes = 16 / 32
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assert a_int16_view.shape == (100 * 2,)
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def test_array_view_invalid():
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a = np.ones(100 * 4).astype("uint8")
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with pytest.raises(TypeError):
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m.array_view(a, "deadly_dtype")
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def test_reshape_initializer_list():
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def test_reshape_initializer_list():
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a = np.arange(2 * 7 * 3) + 1
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a = np.arange(2 * 7 * 3) + 1
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x = m.reshape_initializer_list(a, 2, 7, 3)
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x = m.reshape_initializer_list(a, 2, 7, 3)
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