Add the buffer interface for wrapped STL vectors

Allows use of vectors as python buffers, so for example they can be adopted without a copy by numpy.asarray
Allows faster conversion of buffers to vectors by copying instead of individually casting the elements
This commit is contained in:
Patrick Stewart 2016-11-08 13:03:34 +00:00 committed by Wenzel Jakob
parent 16afbcef46
commit 5467979588
3 changed files with 130 additions and 2 deletions

View File

@ -326,6 +326,49 @@ template <typename Vector, typename Class_> auto vector_if_insertion_operator(Cl
);
}
// Provide the buffer interface for vectors if we have data() and we have a format for it
// GCC seems to have "void std::vector<bool>::data()" - doing SFINAE on the existence of data() is insufficient, we need to check it returns an appropriate pointer
template <typename Vector, typename = void>
struct vector_has_data_and_format : std::false_type {};
template <typename Vector>
struct vector_has_data_and_format<Vector, enable_if_t<std::is_same<decltype(py::format_descriptor<typename Vector::value_type>::format(), std::declval<Vector>().data()), typename Vector::value_type*>::value>> : std::true_type {};
// Add the buffer interface to a vector
template <typename Vector, typename Class_, typename... Args>
enable_if_t<detail::any_of<std::is_same<Args, py::buffer_protocol>...>::value>
vector_buffer(Class_& cl) {
using T = typename Vector::value_type;
static_assert(vector_has_data_and_format<Vector>::value, "There is not an appropriate format descriptor for this vector");
// numpy.h declares this for arbitrary types, but it may raise an exception and crash hard at runtime if PYBIND11_NUMPY_DTYPE hasn't been called, so check here
py::format_descriptor<T>::format();
cl.def_buffer([](Vector& v) -> py::buffer_info {
return py::buffer_info(v.data(), sizeof(T), py::format_descriptor<T>::format(), 1, {v.size()}, {sizeof(T)});
});
cl.def("__init__", [](Vector& vec, py::buffer buf) {
auto info = buf.request();
if (info.ndim != 1 || info.strides[0] <= 0 || info.strides[0] % sizeof(T))
throw pybind11::type_error("Only valid 1D buffers can be copied to a vector");
if (!detail::compare_buffer_info<T>::compare(info) || sizeof(T) != info.itemsize)
throw pybind11::type_error("Format mismatch (Python: " + info.format + " C++: " + py::format_descriptor<T>::format() + ")");
new (&vec) Vector();
vec.reserve(info.shape[0]);
T *p = static_cast<T*>(info.ptr);
auto step = info.strides[0] / sizeof(T);
T *end = p + info.shape[0] * step;
for (; p < end; p += step)
vec.push_back(*p);
});
return;
}
template <typename Vector, typename Class_, typename... Args>
enable_if_t<!detail::any_of<std::is_same<Args, py::buffer_protocol>...>::value> vector_buffer(Class_&) {}
NAMESPACE_END(detail)
//
@ -337,6 +380,9 @@ pybind11::class_<Vector, holder_type> bind_vector(pybind11::module &m, std::stri
Class_ cl(m, name.c_str(), std::forward<Args>(args)...);
// Declare the buffer interface if a py::buffer_protocol() is passed in
detail::vector_buffer<Vector, Class_, Args...>(cl);
cl.def(pybind11::init<>());
// Register copy constructor (if possible)

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@ -10,6 +10,7 @@
#include "pybind11_tests.h"
#include <pybind11/stl_bind.h>
#include <pybind11/numpy.h>
#include <map>
#include <deque>
#include <unordered_map>
@ -58,17 +59,45 @@ template <class Map> Map *times_ten(int n) {
return m;
}
struct VStruct {
bool w;
uint32_t x;
double y;
bool z;
};
struct VUndeclStruct { //dtype not declared for this version
bool w;
uint32_t x;
double y;
bool z;
};
test_initializer stl_binder_vector([](py::module &m) {
py::class_<El>(m, "El")
.def(py::init<int>());
py::bind_vector<std::vector<unsigned int>>(m, "VectorInt");
py::bind_vector<std::vector<unsigned char>>(m, "VectorUChar", py::buffer_protocol());
py::bind_vector<std::vector<unsigned int>>(m, "VectorInt", py::buffer_protocol());
py::bind_vector<std::vector<bool>>(m, "VectorBool");
py::bind_vector<std::vector<El>>(m, "VectorEl");
py::bind_vector<std::vector<std::vector<El>>>(m, "VectorVectorEl");
m.def("create_undeclstruct", [m] () mutable {
py::bind_vector<std::vector<VUndeclStruct>>(m, "VectorUndeclStruct", py::buffer_protocol());
});
try {
py::module::import("numpy");
} catch (...) {
return;
}
PYBIND11_NUMPY_DTYPE(VStruct, w, x, y, z);
py::class_<VStruct>(m, "VStruct").def_readwrite("x", &VStruct::x);
py::bind_vector<std::vector<VStruct>>(m, "VectorStruct", py::buffer_protocol());
m.def("get_vectorstruct", [] {return std::vector<VStruct> {{0, 5, 3.0, 1}, {1, 30, -1e4, 0}};});
});
test_initializer stl_binder_map([](py::module &m) {
@ -97,4 +126,3 @@ test_initializer stl_binder_noncopyable([](py::module &m) {
py::bind_map<std::unordered_map<int, E_nc>>(m, "UmapENC");
m.def("get_umnc", &times_ten<std::unordered_map<int, E_nc>>, py::return_value_policy::reference);
});

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@ -1,3 +1,10 @@
import pytest
import sys
with pytest.suppress(ImportError):
import numpy as np
def test_vector_int():
from pybind11_tests import VectorInt
@ -26,6 +33,53 @@ def test_vector_int():
assert v_int2 == VectorInt([0, 99, 2, 3])
@pytest.unsupported_on_pypy
def test_vector_buffer():
from pybind11_tests import VectorUChar, create_undeclstruct
b = bytearray([1, 2, 3, 4])
v = VectorUChar(b)
assert v[1] == 2
v[2] = 5
m = memoryview(v) # We expose the buffer interface
if sys.version_info.major > 2:
assert m[2] == 5
m[2] = 6
else:
assert m[2] == '\x05'
m[2] = '\x06'
assert v[2] == 6
with pytest.raises(RuntimeError):
create_undeclstruct() # Undeclared struct contents, no buffer interface
@pytest.requires_numpy
def test_vector_buffer_numpy():
from pybind11_tests import VectorInt, get_vectorstruct
a = np.array([1, 2, 3, 4], dtype=np.int32)
with pytest.raises(TypeError):
VectorInt(a)
a = np.array([[1, 2, 3, 4], [5, 6, 7, 8], [9, 10, 11, 12]], dtype=np.uintc)
v = VectorInt(a[0, :])
assert len(v) == 4
assert v[2] == 3
m = np.asarray(v)
m[2] = 5
assert v[2] == 5
v = VectorInt(a[:, 1])
assert len(v) == 3
assert v[2] == 10
v = get_vectorstruct()
assert v[0].x == 5
m = np.asarray(v)
m[1]['x'] = 99
assert v[1].x == 99
def test_vector_custom():
from pybind11_tests import El, VectorEl, VectorVectorEl