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reshape for numpy arrays (#984)
* reshape * more tests * Update numpy.h * Update test_numpy_array.py * Update numpy.h * Update numpy.h * Update test_numpy_array.cpp * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix merge bug * Make clang-tidy happy * Add xfail for PyPy * Fix casting issue * Address reviews on additional tests * Fix ordering * Do a little more reordering * Fix typo * Try improving tests * Fix error in reshape * Add one more reshape test * streamlining new tests; removing a few stray msg Co-authored-by: ncullen93 <ncullen.th@dartmouth.edu> Co-authored-by: NC Cullen <nicholas.c.cullen.th@dartmouth.edu> Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Ralf Grosse-Kunstleve <rwgk@google.com>
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@ -198,6 +198,8 @@ struct npy_api {
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// Unused. Not removed because that affects ABI of the class.
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// Unused. Not removed because that affects ABI of the class.
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int (*PyArray_SetBaseObject_)(PyObject *, PyObject *);
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int (*PyArray_SetBaseObject_)(PyObject *, PyObject *);
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PyObject* (*PyArray_Resize_)(PyObject*, PyArray_Dims*, int, int);
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PyObject* (*PyArray_Resize_)(PyObject*, PyArray_Dims*, int, int);
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PyObject* (*PyArray_Newshape_)(PyObject*, PyArray_Dims*, int);
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private:
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private:
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enum functions {
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enum functions {
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API_PyArray_GetNDArrayCFeatureVersion = 211,
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API_PyArray_GetNDArrayCFeatureVersion = 211,
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@ -212,10 +214,11 @@ private:
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API_PyArray_NewCopy = 85,
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API_PyArray_NewCopy = 85,
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API_PyArray_NewFromDescr = 94,
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API_PyArray_NewFromDescr = 94,
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API_PyArray_DescrNewFromType = 96,
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API_PyArray_DescrNewFromType = 96,
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API_PyArray_Newshape = 135,
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API_PyArray_Squeeze = 136,
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API_PyArray_DescrConverter = 174,
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API_PyArray_DescrConverter = 174,
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API_PyArray_EquivTypes = 182,
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API_PyArray_EquivTypes = 182,
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API_PyArray_GetArrayParamsFromObject = 278,
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API_PyArray_GetArrayParamsFromObject = 278,
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API_PyArray_Squeeze = 136,
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API_PyArray_SetBaseObject = 282
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API_PyArray_SetBaseObject = 282
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};
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};
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@ -243,11 +246,13 @@ private:
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DECL_NPY_API(PyArray_NewCopy);
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DECL_NPY_API(PyArray_NewCopy);
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DECL_NPY_API(PyArray_NewFromDescr);
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DECL_NPY_API(PyArray_NewFromDescr);
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DECL_NPY_API(PyArray_DescrNewFromType);
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DECL_NPY_API(PyArray_DescrNewFromType);
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DECL_NPY_API(PyArray_Newshape);
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DECL_NPY_API(PyArray_Squeeze);
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DECL_NPY_API(PyArray_DescrConverter);
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DECL_NPY_API(PyArray_DescrConverter);
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DECL_NPY_API(PyArray_EquivTypes);
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DECL_NPY_API(PyArray_EquivTypes);
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DECL_NPY_API(PyArray_GetArrayParamsFromObject);
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DECL_NPY_API(PyArray_GetArrayParamsFromObject);
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DECL_NPY_API(PyArray_Squeeze);
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DECL_NPY_API(PyArray_SetBaseObject);
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DECL_NPY_API(PyArray_SetBaseObject);
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#undef DECL_NPY_API
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#undef DECL_NPY_API
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return api;
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return api;
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}
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}
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@ -785,6 +790,18 @@ public:
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if (isinstance<array>(new_array)) { *this = std::move(new_array); }
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if (isinstance<array>(new_array)) { *this = std::move(new_array); }
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}
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}
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/// Optional `order` parameter omitted, to be added as needed.
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array reshape(ShapeContainer new_shape) {
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detail::npy_api::PyArray_Dims d
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= {reinterpret_cast<Py_intptr_t *>(new_shape->data()), int(new_shape->size())};
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auto new_array
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= reinterpret_steal<array>(detail::npy_api::get().PyArray_Newshape_(m_ptr, &d, 0));
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if (!new_array) {
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throw error_already_set();
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}
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return new_array;
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}
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/// Ensure that the argument is a NumPy array
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/// Ensure that the argument is a NumPy array
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/// In case of an error, nullptr is returned and the Python error is cleared.
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/// In case of an error, nullptr is returned and the Python error is cleared.
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static array ensure(handle h, int ExtraFlags = 0) {
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static array ensure(handle h, int ExtraFlags = 0) {
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@ -405,6 +405,13 @@ TEST_SUBMODULE(numpy_array, sm) {
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return a;
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return a;
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});
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});
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sm.def("reshape_initializer_list", [](py::array_t<int> a, size_t N, size_t M, size_t O) {
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return a.reshape({N, M, O});
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});
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sm.def("reshape_tuple", [](py::array_t<int> a, const std::vector<int> &new_shape) {
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return a.reshape(new_shape);
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});
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sm.def("index_using_ellipsis",
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sm.def("index_using_ellipsis",
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[](const py::array &a) { return a[py::make_tuple(0, py::ellipsis(), 0)]; });
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[](const py::array &a) { return a[py::make_tuple(0, py::ellipsis(), 0)]; });
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@ -411,7 +411,7 @@ def test_array_unchecked_fixed_dims(msg):
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assert m.proxy_auxiliaries2_const_ref(z1)
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assert m.proxy_auxiliaries2_const_ref(z1)
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def test_array_unchecked_dyn_dims(msg):
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def test_array_unchecked_dyn_dims():
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z1 = np.array([[1, 2], [3, 4]], dtype="float64")
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z1 = np.array([[1, 2], [3, 4]], dtype="float64")
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m.proxy_add2_dyn(z1, 10)
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m.proxy_add2_dyn(z1, 10)
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assert np.all(z1 == [[11, 12], [13, 14]])
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assert np.all(z1 == [[11, 12], [13, 14]])
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@ -444,7 +444,7 @@ def test_initializer_list():
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assert m.array_initializer_list4().shape == (1, 2, 3, 4)
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assert m.array_initializer_list4().shape == (1, 2, 3, 4)
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def test_array_resize(msg):
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def test_array_resize():
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a = np.array([1, 2, 3, 4, 5, 6, 7, 8, 9], dtype="float64")
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a = np.array([1, 2, 3, 4, 5, 6, 7, 8, 9], dtype="float64")
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m.array_reshape2(a)
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m.array_reshape2(a)
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assert a.size == 9
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assert a.size == 9
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@ -470,12 +470,37 @@ def test_array_resize(msg):
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@pytest.mark.xfail("env.PYPY")
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@pytest.mark.xfail("env.PYPY")
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def test_array_create_and_resize(msg):
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def test_array_create_and_resize():
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a = m.create_and_resize(2)
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a = m.create_and_resize(2)
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assert a.size == 4
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assert a.size == 4
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assert np.all(a == 42.0)
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assert np.all(a == 42.0)
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def test_reshape_initializer_list():
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a = np.arange(2 * 7 * 3) + 1
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x = m.reshape_initializer_list(a, 2, 7, 3)
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assert x.shape == (2, 7, 3)
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assert list(x[1][4]) == [34, 35, 36]
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with pytest.raises(ValueError) as excinfo:
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m.reshape_initializer_list(a, 1, 7, 3)
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assert str(excinfo.value) == "cannot reshape array of size 42 into shape (1,7,3)"
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def test_reshape_tuple():
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a = np.arange(3 * 7 * 2) + 1
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x = m.reshape_tuple(a, (3, 7, 2))
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assert x.shape == (3, 7, 2)
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assert list(x[1][4]) == [23, 24]
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y = m.reshape_tuple(x, (x.size,))
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assert y.shape == (42,)
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with pytest.raises(ValueError) as excinfo:
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m.reshape_tuple(a, (3, 7, 1))
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assert str(excinfo.value) == "cannot reshape array of size 42 into shape (3,7,1)"
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with pytest.raises(ValueError) as excinfo:
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m.reshape_tuple(a, ())
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assert str(excinfo.value) == "cannot reshape array of size 42 into shape ()"
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def test_index_using_ellipsis():
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def test_index_using_ellipsis():
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a = m.index_using_ellipsis(np.zeros((5, 6, 7)))
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a = m.index_using_ellipsis(np.zeros((5, 6, 7)))
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assert a.shape == (6,)
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assert a.shape == (6,)
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