Fix undefined memoryview format (#2223)

* Fix undefined memoryview format

* Add missing <algorithm> header

* Add workaround for py27 array compatibility

* Workaround py27 memoryview behavior

* Fix memoryview constructor from buffer_info

* Workaround PyMemoryView_FromMemory availability in py27

* Fix up memoryview tests

* Update memoryview test from buffer to check signedness

* Use static factory method to create memoryview

* Remove ndim arg from memoryview::frombuffer and add tests

* Allow ndim=0 memoryview and documentation fixup

* Use void* to align to frombuffer method signature

* Add const variants of frombuffer and frommemory

* Add memory view section in doc

* Fix docs

* Add test for null buffer

* Workaround py27 nullptr behavior in test

* Rename frombuffer to from_buffer
This commit is contained in:
Kota Yamaguchi 2020-07-16 00:50:43 +09:00 committed by GitHub
parent aa982e131d
commit e248869893
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GPG Key ID: 4AEE18F83AFDEB23
6 changed files with 293 additions and 27 deletions

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@ -18,3 +18,5 @@ ALIASES += "endrst=\endverbatim"
QUIET = YES QUIET = YES
WARNINGS = YES WARNINGS = YES
WARN_IF_UNDOCUMENTED = NO WARN_IF_UNDOCUMENTED = NO
PREDEFINED = DOXYGEN_SHOULD_SKIP_THIS \
PY_MAJOR_VERSION=3

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@ -384,3 +384,45 @@ operation on the C++ side:
py::array a = /* A NumPy array */; py::array a = /* A NumPy array */;
py::array b = a[py::make_tuple(0, py::ellipsis(), 0)]; py::array b = a[py::make_tuple(0, py::ellipsis(), 0)];
Memory view
===========
For a case when we simply want to provide a direct accessor to C/C++ buffer
without a concrete class object, we can return a ``memoryview`` object. Suppose
we wish to expose a ``memoryview`` for 2x4 uint8_t array, we can do the
following:
.. code-block:: cpp
const uint8_t buffer[] = {
0, 1, 2, 3,
4, 5, 6, 7
};
m.def("get_memoryview2d", []() {
return py::memoryview::from_buffer(
buffer, // buffer pointer
{ 2, 4 }, // shape (rows, cols)
{ sizeof(uint8_t) * 4, sizeof(uint8_t) } // strides in bytes
);
})
This approach is meant for providing a ``memoryview`` for a C/C++ buffer not
managed by Python. The user is responsible for managing the lifetime of the
buffer. Using a ``memoryview`` created in this way after deleting the buffer in
C++ side results in undefined behavior.
We can also use ``memoryview::from_memory`` for a simple 1D contiguous buffer:
.. code-block:: cpp
m.def("get_memoryview1d", []() {
return py::memoryview::from_memory(
buffer, // buffer pointer
sizeof(uint8_t) * 8 // buffer size
);
})
.. note::
``memoryview::from_memory`` is not available in Python 2.

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@ -54,7 +54,7 @@ struct buffer_info {
explicit buffer_info(Py_buffer *view, bool ownview = true) explicit buffer_info(Py_buffer *view, bool ownview = true)
: buffer_info(view->buf, view->itemsize, view->format, view->ndim, : buffer_info(view->buf, view->itemsize, view->format, view->ndim,
{view->shape, view->shape + view->ndim}, {view->strides, view->strides + view->ndim}, view->readonly) { {view->shape, view->shape + view->ndim}, {view->strides, view->strides + view->ndim}, view->readonly) {
this->view = view; this->m_view = view;
this->ownview = ownview; this->ownview = ownview;
} }
@ -73,16 +73,18 @@ struct buffer_info {
ndim = rhs.ndim; ndim = rhs.ndim;
shape = std::move(rhs.shape); shape = std::move(rhs.shape);
strides = std::move(rhs.strides); strides = std::move(rhs.strides);
std::swap(view, rhs.view); std::swap(m_view, rhs.m_view);
std::swap(ownview, rhs.ownview); std::swap(ownview, rhs.ownview);
readonly = rhs.readonly; readonly = rhs.readonly;
return *this; return *this;
} }
~buffer_info() { ~buffer_info() {
if (view && ownview) { PyBuffer_Release(view); delete view; } if (m_view && ownview) { PyBuffer_Release(m_view); delete m_view; }
} }
Py_buffer *view() const { return m_view; }
Py_buffer *&view() { return m_view; }
private: private:
struct private_ctr_tag { }; struct private_ctr_tag { };
@ -90,7 +92,7 @@ private:
detail::any_container<ssize_t> &&shape_in, detail::any_container<ssize_t> &&strides_in, bool readonly) detail::any_container<ssize_t> &&shape_in, detail::any_container<ssize_t> &&strides_in, bool readonly)
: buffer_info(ptr, itemsize, format, ndim, std::move(shape_in), std::move(strides_in), readonly) { } : buffer_info(ptr, itemsize, format, ndim, std::move(shape_in), std::move(strides_in), readonly) { }
Py_buffer *view = nullptr; Py_buffer *m_view = nullptr;
bool ownview = false; bool ownview = false;
}; };

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@ -1336,35 +1336,139 @@ public:
class memoryview : public object { class memoryview : public object {
public: public:
explicit memoryview(const buffer_info& info) { PYBIND11_OBJECT_CVT(memoryview, object, PyMemoryView_Check, PyMemoryView_FromObject)
static Py_buffer buf { };
// Py_buffer uses signed sizes, strides and shape!..
static std::vector<Py_ssize_t> py_strides { };
static std::vector<Py_ssize_t> py_shape { };
buf.buf = info.ptr;
buf.itemsize = info.itemsize;
buf.format = const_cast<char *>(info.format.c_str());
buf.ndim = (int) info.ndim;
buf.len = info.size;
py_strides.clear();
py_shape.clear();
for (size_t i = 0; i < (size_t) info.ndim; ++i) {
py_strides.push_back(info.strides[i]);
py_shape.push_back(info.shape[i]);
}
buf.strides = py_strides.data();
buf.shape = py_shape.data();
buf.suboffsets = nullptr;
buf.readonly = info.readonly;
buf.internal = nullptr;
m_ptr = PyMemoryView_FromBuffer(&buf); /** \rst
Creates ``memoryview`` from ``buffer_info``.
``buffer_info`` must be created from ``buffer::request()``. Otherwise
throws an exception.
For creating a ``memoryview`` from objects that support buffer protocol,
use ``memoryview(const object& obj)`` instead of this constructor.
\endrst */
explicit memoryview(const buffer_info& info) {
if (!info.view())
pybind11_fail("Prohibited to create memoryview without Py_buffer");
// Note: PyMemoryView_FromBuffer never increments obj reference.
m_ptr = (info.view()->obj) ?
PyMemoryView_FromObject(info.view()->obj) :
PyMemoryView_FromBuffer(info.view());
if (!m_ptr) if (!m_ptr)
pybind11_fail("Unable to create memoryview from buffer descriptor"); pybind11_fail("Unable to create memoryview from buffer descriptor");
} }
PYBIND11_OBJECT_CVT(memoryview, object, PyMemoryView_Check, PyMemoryView_FromObject) /** \rst
Creates ``memoryview`` from static buffer.
This method is meant for providing a ``memoryview`` for C/C++ buffer not
managed by Python. The caller is responsible for managing the lifetime
of ``ptr`` and ``format``, which MUST outlive the memoryview constructed
here.
See also: Python C API documentation for `PyMemoryView_FromBuffer`_.
.. _PyMemoryView_FromBuffer: https://docs.python.org/c-api/memoryview.html#c.PyMemoryView_FromBuffer
:param ptr: Pointer to the buffer.
:param itemsize: Byte size of an element.
:param format: Pointer to the null-terminated format string. For
homogeneous Buffers, this should be set to
``format_descriptor<T>::value``.
:param shape: Shape of the tensor (1 entry per dimension).
:param strides: Number of bytes between adjacent entries (for each
per dimension).
:param readonly: Flag to indicate if the underlying storage may be
written to.
\endrst */
static memoryview from_buffer(
void *ptr, ssize_t itemsize, const char *format,
detail::any_container<ssize_t> shape,
detail::any_container<ssize_t> strides, bool readonly = false);
static memoryview from_buffer(
const void *ptr, ssize_t itemsize, const char *format,
detail::any_container<ssize_t> shape,
detail::any_container<ssize_t> strides) {
return memoryview::from_buffer(
const_cast<void*>(ptr), itemsize, format, shape, strides, true);
}
template<typename T>
static memoryview from_buffer(
T *ptr, detail::any_container<ssize_t> shape,
detail::any_container<ssize_t> strides, bool readonly = false) {
return memoryview::from_buffer(
reinterpret_cast<void*>(ptr), sizeof(T),
format_descriptor<T>::value, shape, strides, readonly);
}
template<typename T>
static memoryview from_buffer(
const T *ptr, detail::any_container<ssize_t> shape,
detail::any_container<ssize_t> strides) {
return memoryview::from_buffer(
const_cast<T*>(ptr), shape, strides, true);
}
#if PY_MAJOR_VERSION >= 3
/** \rst
Creates ``memoryview`` from static memory.
This method is meant for providing a ``memoryview`` for C/C++ buffer not
managed by Python. The caller is responsible for managing the lifetime
of ``mem``, which MUST outlive the memoryview constructed here.
This method is not available in Python 2.
See also: Python C API documentation for `PyMemoryView_FromBuffer`_.
.. _PyMemoryView_FromMemory: https://docs.python.org/c-api/memoryview.html#c.PyMemoryView_FromMemory
\endrst */
static memoryview from_memory(void *mem, ssize_t size, bool readonly = false) {
PyObject* ptr = PyMemoryView_FromMemory(
reinterpret_cast<char*>(mem), size,
(readonly) ? PyBUF_READ : PyBUF_WRITE);
if (!ptr)
pybind11_fail("Could not allocate memoryview object!");
return memoryview(object(ptr, stolen_t{}));
}
static memoryview from_memory(const void *mem, ssize_t size) {
return memoryview::from_memory(const_cast<void*>(mem), size, true);
}
#endif
}; };
#ifndef DOXYGEN_SHOULD_SKIP_THIS
inline memoryview memoryview::from_buffer(
void *ptr, ssize_t itemsize, const char* format,
detail::any_container<ssize_t> shape,
detail::any_container<ssize_t> strides, bool readonly) {
size_t ndim = shape->size();
if (ndim != strides->size())
pybind11_fail("memoryview: shape length doesn't match strides length");
ssize_t size = ndim ? 1 : 0;
for (size_t i = 0; i < ndim; ++i)
size *= (*shape)[i];
Py_buffer view;
view.buf = ptr;
view.obj = nullptr;
view.len = size * itemsize;
view.readonly = static_cast<int>(readonly);
view.itemsize = itemsize;
view.format = const_cast<char*>(format);
view.ndim = static_cast<int>(ndim);
view.shape = shape->data();
view.strides = strides->data();
view.suboffsets = nullptr;
view.internal = nullptr;
PyObject* obj = PyMemoryView_FromBuffer(&view);
if (!obj)
throw error_already_set();
return memoryview(object(obj, stolen_t{}));
}
#endif // DOXYGEN_SHOULD_SKIP_THIS
/// @} pytypes /// @} pytypes
/// \addtogroup python_builtins /// \addtogroup python_builtins

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@ -318,4 +318,53 @@ TEST_SUBMODULE(pytypes, m) {
m.def("test_list_slicing", [](py::list a) { m.def("test_list_slicing", [](py::list a) {
return a[py::slice(0, -1, 2)]; return a[py::slice(0, -1, 2)];
}); });
m.def("test_memoryview_object", [](py::buffer b) {
return py::memoryview(b);
});
m.def("test_memoryview_buffer_info", [](py::buffer b) {
return py::memoryview(b.request());
});
m.def("test_memoryview_from_buffer", [](bool is_unsigned) {
static const int16_t si16[] = { 3, 1, 4, 1, 5 };
static const uint16_t ui16[] = { 2, 7, 1, 8 };
if (is_unsigned)
return py::memoryview::from_buffer(
ui16, { 4 }, { sizeof(uint16_t) });
else
return py::memoryview::from_buffer(
si16, { 5 }, { sizeof(int16_t) });
});
m.def("test_memoryview_from_buffer_nativeformat", []() {
static const char* format = "@i";
static const int32_t arr[] = { 4, 7, 5 };
return py::memoryview::from_buffer(
arr, sizeof(int32_t), format, { 3 }, { sizeof(int32_t) });
});
m.def("test_memoryview_from_buffer_empty_shape", []() {
static const char* buf = "";
return py::memoryview::from_buffer(buf, 1, "B", { }, { });
});
m.def("test_memoryview_from_buffer_invalid_strides", []() {
static const char* buf = "\x02\x03\x04";
return py::memoryview::from_buffer(buf, 1, "B", { 3 }, { });
});
m.def("test_memoryview_from_buffer_nullptr", []() {
return py::memoryview::from_buffer(
static_cast<void*>(nullptr), 1, "B", { }, { });
});
#if PY_MAJOR_VERSION >= 3
m.def("test_memoryview_from_memory", []() {
const char* buf = "\xff\xe1\xab\x37";
return py::memoryview::from_memory(
buf, static_cast<ssize_t>(strlen(buf)));
});
#endif
} }

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@ -278,3 +278,70 @@ def test_number_protocol():
def test_list_slicing(): def test_list_slicing():
li = list(range(100)) li = list(range(100))
assert li[::2] == m.test_list_slicing(li) assert li[::2] == m.test_list_slicing(li)
@pytest.mark.parametrize('method, args, fmt, expected_view', [
(m.test_memoryview_object, (b'red',), 'B', b'red'),
(m.test_memoryview_buffer_info, (b'green',), 'B', b'green'),
(m.test_memoryview_from_buffer, (False,), 'h', [3, 1, 4, 1, 5]),
(m.test_memoryview_from_buffer, (True,), 'H', [2, 7, 1, 8]),
(m.test_memoryview_from_buffer_nativeformat, (), '@i', [4, 7, 5]),
])
def test_memoryview(method, args, fmt, expected_view):
view = method(*args)
assert isinstance(view, memoryview)
assert view.format == fmt
if isinstance(expected_view, bytes) or sys.version_info[0] >= 3:
view_as_list = list(view)
else:
# Using max to pick non-zero byte (big-endian vs little-endian).
view_as_list = [max([ord(c) for c in s]) for s in view]
assert view_as_list == list(expected_view)
@pytest.mark.skipif(
not hasattr(sys, 'getrefcount'),
reason='getrefcount is not available')
@pytest.mark.parametrize('method', [
m.test_memoryview_object,
m.test_memoryview_buffer_info,
])
def test_memoryview_refcount(method):
buf = b'\x0a\x0b\x0c\x0d'
ref_before = sys.getrefcount(buf)
view = method(buf)
ref_after = sys.getrefcount(buf)
assert ref_before < ref_after
assert list(view) == list(buf)
def test_memoryview_from_buffer_empty_shape():
view = m.test_memoryview_from_buffer_empty_shape()
assert isinstance(view, memoryview)
assert view.format == 'B'
if sys.version_info.major < 3:
# Python 2 behavior is weird, but Python 3 (the future) is fine.
assert bytes(view).startswith(b'<memory at ')
else:
assert bytes(view) == b''
def test_test_memoryview_from_buffer_invalid_strides():
with pytest.raises(RuntimeError):
m.test_memoryview_from_buffer_invalid_strides()
def test_test_memoryview_from_buffer_nullptr():
if sys.version_info.major < 3:
m.test_memoryview_from_buffer_nullptr()
else:
with pytest.raises(ValueError):
m.test_memoryview_from_buffer_nullptr()
@pytest.mark.skipif(sys.version_info.major < 3, reason='API not available')
def test_memoryview_from_memory():
view = m.test_memoryview_from_memory()
assert isinstance(view, memoryview)
assert view.format == 'B'
assert bytes(view) == b'\xff\xe1\xab\x37'