Commit Graph

107 Commits

Author SHA1 Message Date
Ralf W. Grosse-Kunstleve
704daac879 Merge branch 'master' into smart_holder 2021-07-06 14:12:08 -07:00
luzpaz
8bee61b645
docs: fix various typos (#3075)
Found via `codespell -q 3 -L nd,ot,thist`
2021-07-04 19:58:35 -04:00
Ralf W. Grosse-Kunstleve
ba3f167a52
Disabling valgrind for now. (#3068) 2021-06-30 23:37:50 -07:00
Cris Luengo
93e69191c1
fix: enable py::implicitly_convertible<py::none, ...> for py::class_-wrapped types (#3059)
* Allow casting from None to a custom object, closes #2778

* ci.yml patch from the smart_holder branch for full CI coverage.
2021-06-25 17:56:17 -07:00
Ralf W. Grosse-Kunstleve
cfc06838fd Temporarily using DOWNLOAD_CATCH=OFF for all Windows builds.
This also disables catch for some other builds that happen to be in the same
matrix. But there are still plenty of builds running with DOWNLOAD_CATCH=ON.

Workaround for a windows-only download issue that started yesterday (2020-06-23):

-- Downloading catch v2.13.2...
CMake Error at tools/FindCatch.cmake:40 (message):
  Could not download
  https://github.com/philsquared/Catch/releases/download/v2.13.2/catch.hpp
Call Stack (most recent call first):
  tools/FindCatch.cmake:59 (_download_catch)
  tests/pure_cpp/CMakeLists.txt:1 (find_package)
2021-06-24 12:02:42 -07:00
Ralf W. Grosse-Kunstleve
854a95b47d Merge branch 'master' into smart_holder 2021-06-22 15:16:14 -07:00
Ralf W. Grosse-Kunstleve
484b0f0433
Updating and slightly enhancing instructions for running clang-tidy. (#3055)
* Updating and slightly enhancing instructions for running clang-tidy.

* Making documented commands identical to workflow commands. Adding comment in workflow file pointing to documentation.
2021-06-22 15:12:58 -07:00
Ralf W. Grosse-Kunstleve
898d5b301c Manually fixing merge conflict. 2021-06-22 12:19:40 -07:00
Aaron Gokaslan
dac74ebdf5
fix(clang-tidy): performance fixes applied in tests and CI (#3051)
* Initial fixes

* Whoops

* Finish clang-tidy manual fixes

* Add two missing fixes

* Revert

* Update clang-tidy

* Try to fix unreachable code error

* Move nolint comment

* Apply missing fix

* Don't override clang-tidy config

* Does this fix clang-tidy?

* Make all clang-tidy errors visible

* Add comments about NOLINTs and remove a few

* Fix typo
2021-06-22 12:11:54 -04:00
Ralf W. Grosse-Kunstleve
8d1e0b3903
[smart_holder] clang-tidy fixes (related to recent clang-tidy changes on master). (#3053)
* clang-tidy fixes (related to recent clang-tidy changes on master).

* More clang-tidy fixes.
2021-06-21 12:40:10 -07:00
Ralf W. Grosse-Kunstleve
7f41bea169 Tracking ci.yml changes from master. 2021-06-19 15:56:08 -07:00
Ralf W. Grosse-Kunstleve
fb7452ce39 Merge branch 'master' into smart_holder 2021-06-19 15:52:36 -07:00
dependabot[bot]
9b3b357706
chore(deps): bump ilammy/msvc-dev-cmd from 1.8.1 to 1.9.0 (#3027) 2021-06-19 18:39:54 -04:00
Ralf W. Grosse-Kunstleve
cc0402ef19 Tracking ci.yml changes from master. 2021-06-18 01:43:25 -07:00
Ralf W. Grosse-Kunstleve
516bdae115 Merge branch 'master' into smart_holder 2021-06-18 01:40:28 -07:00
Ralf W. Grosse-Kunstleve
19d99a87fe
Working around Centos 8 failure. (#3030)
* Experiment using -DCMAKE_BUILD_TYPE=Debug for Centos 8.

* Moving comment because the current placement seems to mess up the cmake command.

* Using `echo > VAR_XXX` and `$(cat VAR_XXX)` trick to emulate using variables (https://github.com/actions/starter-workflows/issues/68#issuecomment-524937002).
2021-06-18 01:35:36 -07:00
Ralf W. Grosse-Kunstleve
8f6ca71390 Disabling broken Centos 8 CI. 2021-06-08 12:16:57 -07:00
Ralf W. Grosse-Kunstleve
c47f6aaf43 Tracking ci.yml changes from master. 2021-05-27 11:31:54 -07:00
Ralf W. Grosse-Kunstleve
2cfc017e2d Merge branch 'master' into smart_holder 2021-05-27 11:30:03 -07:00
dependabot[bot]
14023c9cda
chore(deps): bump ilammy/msvc-dev-cmd from 1.8.0 to 1.8.1 (#3021) 2021-05-27 06:10:28 +00:00
Ralf W. Grosse-Kunstleve
1f99e8e63a Tracking ci.yml changes from master. 2021-05-21 13:44:41 -07:00
Ralf W. Grosse-Kunstleve
9be81c84fa Merge branch 'master' into smart_holder 2021-05-21 13:42:19 -07:00
dependabot[bot]
f61855b9d8
chore(deps): bump ilammy/msvc-dev-cmd from 1 to 1.8.0 (#3001) 2021-05-13 23:21:13 -04:00
dependabot[bot]
bc7cf6ef17
chore(deps): bump jwlawson/actions-setup-cmake from 1.8 to 1.9 (#3000) 2021-05-13 23:19:51 -04:00
Ralf W. Grosse-Kunstleve
2256f2a2e1 Updating ci_sh_def.yml, ci_sh_def.yml.patch after git merge master. Pushing directly for this mechanical update. 2021-04-22 06:33:17 -07:00
Ralf W. Grosse-Kunstleve
212a083dc0 Merge branch 'master' into smart_holder 2021-04-22 06:30:10 -07:00
Henry Schreiner
54430436fe
ci: install Boost for boost checks (#2968) 2021-04-22 00:03:07 -04:00
Ralf W. Grosse-Kunstleve
91e81b07d7 Re-enabling Python 3.10-dev jobs, made possible by PR #2967. Pushing directly because this just affects the CI config. 2021-04-21 12:42:06 -07:00
Ralf W. Grosse-Kunstleve
7d093a1906 Merge branch 'master' into smart_holder 2021-04-21 12:36:53 -07:00
dependabot[bot]
bca4b36ba7
chore(deps): bump pre-commit/action from v2.0.2 to v2.0.3 (#2964)
Bumps [pre-commit/action](https://github.com/pre-commit/action) from v2.0.2 to v2.0.3.
- [Release notes](https://github.com/pre-commit/action/releases)
- [Commits](https://github.com/pre-commit/action/compare/v2.0.2...9b88afc9cd57fd75b655d5c71bd38146d07135fe)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-04-21 15:00:00 -04:00
Ralf W. Grosse-Kunstleve
d7f98ac9a1
Adding CI-SH-DEF GitHub Actions workflow, based on PR #2930. (#2963)
* Adding ci_sh_def.yml, based on PR #2930.

* Adding exludes for .patch files.
2021-04-20 14:34:31 -07:00
Ralf W. Grosse-Kunstleve
99de498b26
Bug fix: adding back !is_alias<Class>(ptr) that were accidentally omitted. (#2958)
* Bug fix: adding back `!is_alias<Class>(ptr)` that were accidentally omitted.

* Introducing PYBIND11_SH_AVL, PYBIND11_SH_DEF macros. Applying PYBIND11_SH_DEF to test_factory_constructors.py to complete test coverage.

* Using PYBIND11_SH_DEF in test_methods_and_attributes.cpp, for more complete test coverage.

* Using PYBIND11_SH_DEF in test_multiple_inheritance.cpp, for more complete test coverage.

* Cleaning up test_classh_mock.cpp.

* Better explanations for PYBIND11_SH_AVL, PYBIND11_SH_DEF.

* Disabling 3.10-dev builds.
2021-04-19 10:54:37 -07:00
Ralf W. Grosse-Kunstleve
ab590c624b Disabling deadsnakes 3.10-dev CI (currently broken). 2021-04-14 15:00:56 -07:00
Ralf W. Grosse-Kunstleve
88a09988e7 Merge branch 'master' into smart_holder 2021-04-08 23:17:31 -07:00
dependabot[bot]
16c23fef31
chore(deps): bump pre-commit/action from v2.0.0 to v2.0.2 (#2935) 2021-04-05 22:53:59 -04:00
Ralf W. Grosse-Kunstleve
3f35af7441 Adding smart_holder branch to workflow_dispatch in all places where stable appears. 2021-03-18 11:29:22 -07:00
dependabot[bot]
59f8d7f1bf
chore(deps): bump jwlawson/actions-setup-cmake from v1.7 to v1.8 (#2865) 2021-02-17 18:48:37 +00:00
dependabot[bot]
c236239356
chore(deps): bump pypa/gh-action-pypi-publish from v1.4.1 to v1.4.2 (#2851)
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from v1.4.1 to v1.4.2.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.4.1...27b31702a0e7fc50959f5ad993c78deac1bdfc29)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-02-09 17:00:16 -05:00
Kumar Aditya
948d09d6df
test: Test against Python 3.10 (#2848) 2021-02-08 15:35:30 -05:00
dependabot[bot]
42e7380705
chore(deps): bump jwlawson/actions-setup-cmake from v1.6 to v1.7 (#2818)
Bumps [jwlawson/actions-setup-cmake](https://github.com/jwlawson/actions-setup-cmake) from v1.6 to v1.7.
- [Release notes](https://github.com/jwlawson/actions-setup-cmake/releases)
- [Commits](https://github.com/jwlawson/actions-setup-cmake/compare/v1.6...821902fd0e0da89b13fd3161d358e96bf7550883)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-01-25 15:11:18 -05:00
Henry Schreiner
87f5aff4a7
ci: update to setup-cmake v1.6 (#2805) 2021-01-19 18:24:46 -05:00
Michael Kuron
48534089f7
fix: Intel ICC C++17 compatibility (#2729)
* CI: Intel icc/icpc via oneAPI

Add testing for Intel icc/icpc via the oneAPI images.
Intel oneAPI is in a late beta stage, currently shipping
oneAPI beta09 with ICC 20.2.

CI: Skip Interpreter Tests for Intel

Cannot find how to add this, neiter the package `libc6-dev` nor
`intel-oneapi-mkl-devel` help when installed to solve this:
```
-- Looking for C++ include pthread.h
-- Looking for C++ include pthread.h - not found
CMake Error at /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:165 (message):
  Could NOT find Threads (missing: Threads_FOUND)
Call Stack (most recent call first):
  /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:458 (_FPHSA_FAILURE_MESSAGE)
  /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindThreads.cmake:234 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
  tests/test_embed/CMakeLists.txt:17 (find_package)
```

CI: libc6-dev from GCC for ICC

CI: Run bare metal for oneAPI

CI: Ubuntu 18.04 for oneAPI

CI: Intel +Catch -Eigen

CI: CMake from Apt (ICC tests)

CI: Replace Intel Py with GCC Py

CI: Intel w/o GCC's Eigen

CI: ICC with verbose make

[Debug] Find core dump

tests: use arg{} instead of arg() for Intel

tests: adding a few more missing {}

fix: sync with @tobiasleibner's branch

fix: try ubuntu 20-04

fix: drop exit 1

docs: Apply suggestions from code review

Co-authored-by: Tobias Leibner <tobias.leibner@googlemail.com>

Workaround for ICC enable_if issues

Another workaround for ICC's enable_if issues

fix error in previous commit

Disable one test for the Intel compiler in C++17 mode

Add back one instance of py::arg().noconvert()

Add NOLINT to fix clang-tidy check

Work around for ICC internal error in PYBIND11_EXPAND_SIDE_EFFECTS in C++17 mode

CI: Intel ICC with C++17

docs: pybind11/numpy.h does not require numpy at build time. (#2720)

This is nice enough to be mentioned explicitly in the docs.

docs: Update warning about Python 3.9.0 UB, now that 3.9.1 has been released (#2719)

Adjusting `type_caster<std::reference_wrapper<T>>` to support const/non-const propagation in `cast_op`. (#2705)

* Allow type_caster of std::reference_wrapper<T> to be the same as a native reference.

Before, both std::reference_wrapper<T> and std::reference_wrapper<const T> would
invoke cast_op<type>. This doesn't allow the type_caster<> specialization for T
to distinguish reference_wrapper types from value types.

After, the type_caster<> specialization invokes cast_op<type&>, which allows
reference_wrapper to behave in the same way as a native reference type.

* Add tests/examples for std::reference_wrapper<const T>

* Add tests which use mutable/immutable variants

This test is a chimera; it blends the pybind11 casters with a custom
pytype implementation that supports immutable and mutable calls.

In order to detect the immutable/mutable state, the cast_op needs
to propagate it, even through e.g. std::reference<const T>

Note: This is still a work in progress; some things are crashing,
which likely means that I have a refcounting bug or something else
missing.

* Add/finish tests that distinguish const& from &

Fixes the bugs in my custom python type implementation,
demonstrate test that requires const& and reference_wrapper<const T>
being treated differently from Non-const.

* Add passing a const to non-const method.

* Demonstrate non-const conversion of reference_wrapper in tests.

Apply formatting presubmit check.

* Fix build errors from presubmit checks.

* Try and fix a few more CI errors

* More CI fixes.

* More CI fixups.

* Try and get PyPy to work.

* Additional minor fixups. Getting close to CI green.

* More ci fixes?

* fix clang-tidy warnings from presubmit

* fix more clang-tidy warnings

* minor comment and consistency cleanups

* PyDECREF -> Py_DECREF

* copy/move constructors

* Resolve codereview comments

* more review comment fixes

* review comments: remove spurious &

* Make the test fail even when the static_assert is commented out.

This expands the test_freezable_type_caster a bit by:
1/ adding accessors .is_immutable and .addr to compare identity
from python.
2/ Changing the default cast_op of the type_caster<> specialization
to return a non-const value. In normal codepaths this is a reasonable
default.
3/ adding roundtrip variants to exercise the by reference, by pointer
and by reference_wrapper in all call paths.  In conjunction with 2/, this
demonstrates the failure case of the existing std::reference_wrpper conversion,
which now loses const in a similar way that happens when using the default cast_op_type<>.

* apply presubmit formatting

* Revert inclusion of test_freezable_type_caster

There's some concern that this test is a bit unwieldly because of the use
of the raw <Python.h> functions. Removing for now.

* Add a test that validates const references propagation.

This test verifies that cast_op may be used to correctly detect
const reference types when used with std::reference_wrapper.

* mend

* Review comments based changes.

1. std::add_lvalue_reference<type> -> type&
2. Simplify the test a little more; we're never returning the ConstRefCaster
type so the class_ definition can be removed.

* formatted files again.

* Move const_ref_caster test to builtin_casters

* Review comments: use cast_op and adjust some comments.

* Simplify ConstRefCasted test

I like this version better as it moves the assertion that matters
back into python.

ci: drop pypy2 linux, PGI 20.7, add Python 10 dev (#2724)

* ci: drop pypy2 linux, add Python 10 dev

* ci: fix mistake

* ci: commented-out PGI 20.11, drop 20.7

fix: regression with installed pybind11 overriding local one (#2716)

* fix: regression with installed pybind11 overriding discovered one

Closes #2709

* docs: wording incorrect

style: remove redundant instance->owned = true (#2723)

which was just before set to True in instance->allocate_layout()

fix: also throw in the move-constructor added by the PYBIND11_OBJECT macro, after the argument has been moved-out (if necessary) (#2701)

Make args_are_all_* ICC workarounds unconditional

Disable test_aligned on Intel ICC

Fix test_aligned on Intel ICC

Skip test_python_alreadyset_in_destructor on Intel ICC

Fix test_aligned again

ICC CI: Downgrade pytest

pytest 6 does not capture the `discard_as_unraisable` stderr and
just writes a warning with its content instead.

* refactor: simpler Intel workaround, suggested by @laramiel

* fix: try version with impl to see if it is easier to compile

* docs: update README for ICC

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2021-01-17 19:53:07 -05:00
Axel Huebl
0b3df7f964
ci: Intel icc/icpc via oneAPI (#2573)
* CI: Intel icc/icpc via oneAPI

Add testing for Intel icc/icpc via the oneAPI images.
Intel oneAPI is in a late beta stage, currently shipping
oneAPI beta09 with ICC 20.2.

* CI: Skip Interpreter Tests for Intel

Cannot find how to add this, neiter the package `libc6-dev` nor
`intel-oneapi-mkl-devel` help when installed to solve this:
```
-- Looking for C++ include pthread.h
-- Looking for C++ include pthread.h - not found
CMake Error at /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:165 (message):
  Could NOT find Threads (missing: Threads_FOUND)
Call Stack (most recent call first):
  /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:458 (_FPHSA_FAILURE_MESSAGE)
  /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindThreads.cmake:234 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
  tests/test_embed/CMakeLists.txt:17 (find_package)
```

* CI: libc6-dev from GCC for ICC

* CI: Run bare metal for oneAPI

* CI: Ubuntu 18.04 for oneAPI

* CI: Intel +Catch -Eigen

* CI: CMake from Apt (ICC tests)

* CI: Replace Intel Py with GCC Py

* CI: Intel w/o GCC's Eigen

* CI: ICC with verbose make

* [Debug] Find core dump

* tests: use arg{} instead of arg() for Intel

* tests: adding a few more missing {}

* fix: sync with @tobiasleibner's branch

* fix: try ubuntu 20-04

* fix: drop exit 1

* style: clang tidy fix

* style: fix missing NOLINT

* ICC: Update Compiler Name

Changed upstream with the last oneAPI release.

* ICC CI: Downgrade pytest

pytest 6 does not capture the `discard_as_unraisable` stderr and
just writes a warning with its content instead.

* Use new test pinning requirements.txt

* tests: add notes about intel, cleanup

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2021-01-15 15:59:47 -05:00
Yannick Jadoul
0f8d5f2eb6
Add a Valgrind build on debug Python 3.9 (#2746)
* Adding a valgrind build on debug Python 3.9

Co-authored-by: Boris Staletic <boris.staletic@gmail.com>

* Add Valgrind suppression files

- Introduce suppression file, populate it with a first suppression taken from CPython, and fix one leak in the tests
- Suppress leak in NumPy
- More clean tests!
- Tests with names a-e passing (except for test_buffer)
- Suppress multiprocessing errors
- Merge multiprocessing suppressions into other suppression files
- Numpy seems to be spelled with a big P
- Append single entry from valgrind-misc.supp to valgrind-python.supp, and make clear valgrind-python.supp is only CPython

Co-authored-by: Boris Staletic <boris.staletic@gmail.com>

* Enable test_virtual_functions with a workaround

* Add a memcheck cmake target

- Add a memcheck cmake target
- Reformat cmake
- Appease the formatting overlords - they are angry
- Format CMake valgrind target decently

* Update CI config to new action versions

* fix: separate memcheck from pytest

* ci: cleanup

* Merge Valgrind and other deadsnakes builds

Co-authored-by: Boris Staletic <boris.staletic@gmail.com>
Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2021-01-15 21:07:31 +01:00
Yannick Jadoul
f243450e89
ci: disable builds for 3.10.0a4, and enable a nightly 3.10-dev build (#2792)
* Disable builds for 3.10.0a4, and enable a nightly 3.10-dev build

* Fix job name

* Remove deadsnakes job for now

* Add deadsnakes jobs

* There's no deadsnakes 2.7

* Add 3.10 to versions to be discovered by legacy FindPython, and fix debug input to deadsnakes/action

* Try out branch with fix

* Update to deadsnakes/action@v2.1.1
2021-01-13 23:13:19 -05:00
Henry Schreiner
5abce7fce2
ci: use fixed action (#2791) 2021-01-13 20:32:11 +01:00
Yannick Jadoul
7b7ec664b7
ci: pin CMake to 3.19.2, fixes issues with 3.19.3 on Linux (aarch64) and macOS (universal) (#2790) 2021-01-13 11:16:35 -05:00
Henry Schreiner
d5af536fa1
ci: update cmake action (#2734) 2020-12-21 20:58:40 -05:00
Ralf W. Grosse-Kunstleve
cecdfadc58
minor cleanup: fixing or silencing flake8 errors (#2731)
* minor cleanup: fixing or silencing flake8 errors

* ci: lock CMake to non-Universal version

* Update .github/workflows/ci.yml

Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
2020-12-18 19:41:43 -05:00
Henry Schreiner
499fcd5447
ci: drop pypy2 linux, PGI 20.7, add Python 10 dev (#2724)
* ci: drop pypy2 linux, add Python 10 dev

* ci: fix mistake

* ci: commented-out PGI 20.11, drop 20.7
2020-12-15 21:07:41 -05:00