Commit Graph

47 Commits

Author SHA1 Message Date
Ralf W. Grosse-Kunstleve
6df86934c2 Merge branch 'master' into sh_merge_master 2022-08-21 19:32:35 -07:00
Ralf W. Grosse-Kunstleve
68e6fdaa90
embed.h Python 3.11 config.use_environment=1 + PYTHONPATH test (#4119)
* Add debug fprintf to test_interpreter.cpp

* Update `sys.path` from `PYTHONPATH` in Python >= 3.11 branch of `initialize_interpreter()`

* Use `config.isolated = 0; config.use_environment = 1;`

As suggsted by @vstinner here: https://github.com/pybind/pybind11/pull/4119#issuecomment-1219442853

* Add `TEST_CASE("PYTHONPATH is used to update sys.path")`

* Fix clang-tidy error.

* Use `_putenv_s()` under Windows.

* Fix clang-tidy error: argument name ... in comment does not match parameter name

* Remove slash from PYTHONPATH addition, to work around Windows slash-vs-backslash issue.

* Use `py::str(...)` instead of `.attr("__str__")` as suggested by @skylion007

Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>

Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
2022-08-21 09:44:01 -07:00
Ralf W. Grosse-Kunstleve
4d774ec218 Merge branch 'master' into sh_merge_master 2022-07-21 06:53:22 -07:00
Henry Schreiner
7c3a031766
chore: bump clang-tidy to 13 (#3997)
Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
2022-07-13 09:06:32 -05:00
Ralf W. Grosse-Kunstleve
be43439670 Merge branch 'master' into sh_merge_master 2022-02-23 15:47:03 -08:00
StarQTius
9aa676d38d
fix: clear local internals after finalizing interpreter #2101 (#3744)
* Clear local internals after finalizing interpreter

* Add descriptive comments

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-02-20 08:00:29 -08:00
Ralf W. Grosse-Kunstleve
e1751c04f0 Merge branch 'master' into sh_merge_master_after_clang-format_etc
First pass manually resolving the many merge conflicts.
2022-02-14 14:36:08 -08:00
Ralf W. Grosse-Kunstleve
6493f496e3
Python 2 removal part 1: tests (C++ code is intentionally ~untouched) (#3688)
* `#error BYE_BYE_GOLDEN_SNAKE`

* Removing everything related to 2.7 from ci.yml

* Commenting-out Centos7

* Removing `PYTHON: 27` from .appveyor.yml

* "PY2" removal, mainly from tests. C++ code is not touched.

* Systematic removal of `u` prefix from `u"..."` and `u'...'` literals. Collateral cleanup of a couple minor other things.

* Cleaning up around case-insensitive hits for `[^a-z]py.*2` in tests/.

* Removing obsolete Python 2 mention in compiling.rst

* Proper `#error` for Python 2.

* Using PY_VERSION_HEX to guard `#error "PYTHON 2 IS NO LONGER SUPPORTED.`

* chore: bump pre-commit

* style: run pre-commit for pyupgrade 3+

* tests: use sys.version_info, not PY

* chore: more Python 2 removal

* Uncommenting Centos7 block (PR #3691 showed that it is working again).

* Update pre-commit hooks

* Fix pre-commit hook

* refactor: remove Python 2 from CMake

* refactor: remove Python 2 from setup code

* refactor: simplify, better static typing

* feat: fail with nice messages

* refactor: drop Python 2 C++ code

* docs: cleanup for Python 3

* revert: intree

revert: intree

* docs: minor touchup to py2 statement

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
2022-02-10 18:28:08 -08:00
Ralf W. Grosse-Kunstleve
ec24786eab
Fully-automatic clang-format with include reordering (#3713)
* chore: add clang-format

* Removing check-style (Classic check-style)

Ported from @henryiii's 53056b1b0e

* Automatic clang-format changes (NO manual changes).

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2022-02-10 12:17:07 -08:00
Ralf W. Grosse-Kunstleve
7769e7719c
clang-tidy readability-qualified-auto (#3702)
* Adding readability-qualified-auto to .clang-tidy

Ported from @henryiii's 287527f705

* fix: support Python < 3.6

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2022-02-09 06:24:57 -08:00
Ralf W. Grosse-Kunstleve
ddbc74c674 Adding .clang-tidy readability-braces-around-statements option.
clang-tidy automatic changes. NO manual changes.
2022-02-08 13:02:20 -08:00
Michał Górny
96b943be1d
tests: update catch to 2.13.5 to fix glibc 2.34 failures (#3679)
* Download catch for MinGw

* Fix rest of MinGW

* fix: update catch to 2.13.5 to fix glibc 2.34 failures

Update the downloaded Catch version to 2.13.5, in order to fix build
failure on glibc 2.34:

```
In file included from /usr/include/signal.h:328,
                 from /tmp/pybind11/.nox/tests-3-9/tmp/tests/catch/catch.hpp:8030,
                 from /tmp/pybind11/tests/test_embed/catch.cpp:13:
/tmp/pybind11/.nox/tests-3-9/tmp/tests/catch/catch.hpp:10818:58: error: call to non-‘constexpr’ function ‘long int sysconf(int)’
10818 |     static constexpr std::size_t sigStackSize = 32768 >= MINSIGSTKSZ ? 32768 : MINSIGSTKSZ;
      |                                                          ^~~~~~~~~~~
In file included from /usr/include/python3.9/Python.h:36,
                 from /tmp/pybind11/include/pybind11/detail/common.h:215,
                 from /tmp/pybind11/include/pybind11/pytypes.h:12,
                 from /tmp/pybind11/include/pybind11/cast.h:13,
                 from /tmp/pybind11/include/pybind11/attr.h:13,
                 from /tmp/pybind11/include/pybind11/pybind11.h:13,
                 from /tmp/pybind11/include/pybind11/embed.h:12,
                 from /tmp/pybind11/tests/test_embed/catch.cpp:4:
/usr/include/unistd.h:640:17: note: ‘long int sysconf(int)’ declared here
  640 | extern long int sysconf (int __name) __THROW;
      |                 ^~~~~~~
In file included from /tmp/pybind11/tests/test_embed/catch.cpp:13:
/tmp/pybind11/.nox/tests-3-9/tmp/tests/catch/catch.hpp:10877:45: error: size of array ‘altStackMem’ is not an integral constant-expression
10877 |     char FatalConditionHandler::altStackMem[sigStackSize] = {};
      |                                             ^~~~~~~~~~~~
```

The newest Catch version cannot be used yet because of regression:
https://github.com/catchorg/Catch2/pull/2364

* fix: add option for _ check, only define on pybind11

* Revert "fix: add option for _ check, only define on pybind11"

This reverts commit 86817db488.

* fix: only undef _ for catch cpp creation.

Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2022-02-05 23:53:02 -05:00
Ralf W. Grosse-Kunstleve
8a7643f471 Using PYBIND11_SH_DEF for test_override_cache_helper introduced by PR #3465. 2021-11-15 14:59:46 -08:00
Trigve
afdc09deda
[master] Wrong caching of overrides (#3465)
* override: Fix wrong caching of the overrides

There was a problem when the python type, which was stored in override
cache for C++ functions, was destroyed and  the record wasn't removed from the
override cache. Therefor, dangling pointer was stored there. Then when the
memory was reused and new type was allocated at the given address and the
method with the same name (as previously stored in the cache) was actually
overridden in python, it would wrongly find it in the override cache for C++
functions and therefor override from python wouldn't be called.
The fix is to erase the type from the override cache when the type is destroyed.

* test: Pass by const ref instead of by value (clang-tidy)

* test: Rename classes and move to different files

Rename the classes and files so they're no too generic. Also, better place to
test the stuff is in test_virtual_functions.cpp/.py as we're basically testing
the virtual functions/trampolines.

* Add TODO for erasure code

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2021-11-15 13:36:41 -05:00
Aaron Gokaslan
ad96655605
fix: replace free() with std::free() (#3321)
* Disambiguate free() to use std::free()

* Add cstdlib include
2021-10-03 20:15:37 -04:00
Ralf W. Grosse-Kunstleve
6abf2baa62
CodeHealth: Enabling clang-tidy google-explicit-constructor (#3250)
* Adding google-explicit-constructor to .clang-tidy

* clang-tidy explicit attr.h (all automatic)

* clang-tidy explicit cast.h (all automatic)

* clang-tidy detail/init.h (1 NOLINT)

* clang-tidy detail/type_caster_base.h (2 NOLINT)

* clang-tidy pybind11.h (7 NOLINT)

* clang-tidy detail/common.h (3 NOLINT)

* clang-tidy detail/descr.h (2 NOLINT)

* clang-tidy pytypes.h (23 NOLINT, only 1 explicit)

* clang-tidy eigen.h (7 NOLINT, 0 explicit)

* Adding 2 explicit in functional.h

* Adding 4 explicit in iostream.h

* clang-tidy numpy.h (1 NOLINT, 1 explicit)

* clang-tidy embed.h (0 NOLINT, 1 explicit)

* clang-tidy tests/local_bindings.h (0 NOLINT, 4 explicit)

* clang-tidy tests/pybind11_cross_module_tests.cpp (0 NOLINT, 1 explicit)

* clang-tidy tests/pybind11_tests.h (0 NOLINT, 2 explicit)

* clang-tidy tests/test_buffers.cpp (0 NOLINT, 2 explicit)

* clang-tidy tests/test_builtin_casters.cpp (0 NOLINT, 4 explicit)

* clang-tidy tests/test_class.cpp (0 NOLINT, 6 explicit)

* clang-tidy tests/test_copy_move.cpp (0 NOLINT, 7 explicit)

* clang-tidy tests/test_embed/external_module.cpp (0 NOLINT, 1 explicit)

* clang-tidy tests/test_embed/test_interpreter.cpp (0 NOLINT, 1 explicit)

* clang-tidy tests/object.h (0 NOLINT, 2 explicit)

* clang-tidy batch of fully automatic fixes.

* Workaround for MSVC 19.16.27045.0 C++17 Python 2 C++ syntax error.
2021-09-08 18:53:38 -07:00
Dan
930bb16c79
Call PySys_SetArgv when initializing interpreter. (#2341)
* Call PySys_SetArgv when initializing interpreter.

* Document argc/argv parameters in initialize_interpreter.

* Remove manual memory management from set_interpreter_argv in favor of smart pointers.

* Use size_t for indexers in set_interpreter_argv.

* Minimize macros for flow control in set_interpreter_argv.

* Fix 'unused variable' warning on Py2

* whitespace

* Define wide_char_arg_deleter outside set_interpreter_argv.

* Do sys.path workaround in C++ rather than eval.

* Factor out wchar conversion to a separate function.

* Restore widened_argv variable declaration.

* Fix undeclared widened_arg variable on some paths.

* Use delete[] to match new wchar_t[].

* Fix compiler errors

* Use PY_VERSION_HEX for a cleaner CVE-2008-5983 mode check.

* Fix typo

* Use explicit type for deleter so delete[] works cross-compiler.

* Always use PySys_SetArgvEx because pybind11 doesn't support pythons that don't include it.

* Remove pointless ternary operator.

* Use unique_ptr.reset instead of a second initialization.

* Rename add_program_dir_to_path parameter to clarify intent.

* Add defined() check before evaluating HAVE_BROKEN_MBSTOWCS.

* Apply clang-tidy fixes

* Pre-commit

* refactor: use const for set_interpreter_argv

* Try to fix const issue and allocate vector properly

* fix: copy strings on Python 2

* Applying clang-format-diff relative to master.

The only manual change is an added empty line between pybind11 and system `#include`s.

```
git diff -U0 --no-color master | python3 $HOME/clone/llvm-project/clang/tools/clang-format/clang-format-diff.py -p1 -style=file -i
```

Co-authored-by: Boris Staletic <boris.staletic@gmail.com>
Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
2021-08-26 14:12:54 -07:00
Ralf W. Grosse-Kunstleve
c8ce4b8df8
Clone of @virtuald's PR #2112 with minor enhancements. (#3215)
* Add py::raise_from to enable chaining exceptions on Python 3.3+

* Use 'raise from' in initialization

* Documenting the exact base version of _PyErr_FormatVFromCause, adding back `assert`s.

Co-authored-by: Dustin Spicuzza <dustin@virtualroadside.com>
2021-08-23 17:30:01 -07:00
Henry Schreiner
c14b193308
chore: increase CMake upper limit (#3124) 2021-07-28 18:04:14 -07:00
Aaron Gokaslan
9beaa925db
maint(clang-tidy): Improve code readability with explicit boolean casts (#3148)
* maint(clang-tidy) Improve code readability

* Fix minor typos

* Revert optimization that removed test case

* Fix comment formatting

* Revert another optimization to repro an issue

* Remove make_unique since it C++14 and newer only

* eformat comments

* Fix unsignedness of comparison

* Update comment
2021-07-27 15:32:26 -07:00
Aaron Gokaslan
dac74ebdf5
fix(clang-tidy): performance fixes applied in tests and CI (#3051)
* Initial fixes

* Whoops

* Finish clang-tidy manual fixes

* Add two missing fixes

* Revert

* Update clang-tidy

* Try to fix unreachable code error

* Move nolint comment

* Apply missing fix

* Don't override clang-tidy config

* Does this fix clang-tidy?

* Make all clang-tidy errors visible

* Add comments about NOLINTs and remove a few

* Fix typo
2021-06-22 12:11:54 -04:00
Henry Schreiner
eb83feefff
style: avoid using unintialized variables (#2806)
* style: avoid using unintialized variables

Tested with cmake --warn-unintialized -S . -B build

* refactor: use function for possibly uninit vars
2021-01-19 18:48:22 -05:00
Robert Haschke
b72cebeb22
style: clang-tidy: modernize-use-using (#2645)
* style: clang-tidy: modernize-use-using

* style: more clang-tidy checking

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2020-11-09 10:10:19 -08:00
Henry Schreiner
6bcd220c8d
refactor: module -> module_ with typedef (#2544)
* WIP: module -> module_ without typedef

* refactor: allow py::module to work again
2020-10-03 13:38:03 -04:00
Yannick Jadoul
d65e34d61d
Resolve empty statement warning when using PYBIND11_OVERLOAD_PURE_NAME and PYBIND11_OVERLOAD_PURE (#2325)
* Wrap PYBIND11_OVERLOAD_NAME and PYBIND11_OVERLOAD_PURE_NAME in do { ... } while (false), and resolve trailing semicolon

* Deprecate PYBIND11_OVERLOAD_* and get_overload in favor of PYBIND11_OVERRIDE_* and get_override

* Correct erroneous usage of 'overload' instead of 'override' in the implementation and internals

* Fix tests to use non-deprecated PYBIND11_OVERRIDE_* macros

* Update docs to use override instead of overload where appropriate, and add warning about deprecated aliases

* Add semicolons to deprecated PYBIND11_OVERLOAD macros to match original behavior

* Remove deprecation of PYBIND11_OVERLOAD_* macros and get_overload

* Add note to changelog and upgrade guide
2020-09-15 14:56:20 +02:00
Henry Schreiner
04fdc44f50
tests: avoid putting build products into source directory (#2353)
* tests: keep source dir clean

* ci: make first build inplace

* ci: drop dev setting (wasn't doing anything)

* tests: warn if source directory is dirty
2020-08-19 13:11:57 -04:00
Henry Schreiner
1729aae96f
feat: new FindPython support (#2370)
* feat: FindPython support

* refactor: rename to PYBIND11_FINDPYTHON

* docs: Caps fixes

* feat: NOPYTHON mode

* test: check simple call

* docs: add changelog/upgrade guide

* feat: Support Python3 and Python2

* refactor: Use targets in tests

* fix: support CMake 3.4+

* feat: classic search also finds virtual environments

* docs: some updates from @wjakob's review

* fix: wrong name for QUIET mode variable, reported by @skoslowski

* refactor: cleaner output messaging

* fix: support debug Python's in FindPython mode too

* fixup! refactor: cleaner output messaging

* fix: missing pybind11_FOUND and pybind11_INCLUDE_DIR restored to subdir mode

* fix: nicer reporting of Python / PyPy

* fix: out-of-order variable fix

* docs: minor last-minute cleanup
2020-08-19 12:26:26 -04:00
Henry Schreiner
f7abac6689
fix: boost's include dir was listed first (#2384) 2020-08-12 09:33:08 -04:00
Henry Schreiner
94db5c5ed1 format: apply cmake-format 2020-07-30 20:27:55 -04:00
Henry Schreiner
6ec1775fff feat: drop CMake 3.6 and below, modernize CMake
fix: include PYTHON_IS_DEBUG
2020-07-30 20:27:55 -04:00
Henry Schreiner
1b880dfd5a ci: download EIGEN 2020-07-27 22:12:19 -04:00
Henry Schreiner
5927c5819f chore: update Catch 2020-07-26 09:25:27 -04:00
Henry Schreiner
1f53c373e4 fix: C++17 mode on Clang may error 2020-07-26 09:25:27 -04:00
Henry Schreiner
a59c6de821 test: allow MSVC/Xcode to run the embed test 2020-07-23 17:42:53 -04:00
Henry Schreiner
d8c7ee00a6
ci: GHA basic format & pre-commit (#2309) 2020-07-20 13:35:21 -04:00
Jason Rhinelander
f7bc18f528 Fix compatibility with catch v2
Catch v2 changed the `run(...)` signature to take a `char *argv[]`,
arguing partly that technically a `char *argv[]` type is the correct
`main()` signature rather than `const char *argv[]`.

Dropping the `const` here doesn't appear to cause any problems with
catch v1 (tested against both the cmake-downloaded 1.9.3 and Debian's
1.12.1 package) so we can follow suit.
2018-07-19 16:12:39 -03:00
Jason Rhinelander
326deef2ae
Fix segfault when reloading interpreter with external modules (#1092)
* Fix segfault when reloading interpreter with external modules

When embedding the interpreter and loading external modules in that
embedded interpreter, the external module correctly shares its
internals_ptr with the one in the embedded interpreter.  When the
interpreter is shut down, however, only the `internals_ptr` local to
the embedded code is actually reset to nullptr: the external module
remains set.

The result is that loading an external pybind11 module, letting the
interpreter go through a finalize/initialize, then attempting to use
something in the external module fails because this external module is
still trying to use the old (destroyed) internals.  This causes
undefined behaviour (typically a segfault).

This commit fixes it by adding a level of indirection in the internals
path, converting the local internals variable to `internals **` instead
of `internals *`.  With this change, we can detect a stale internals
pointer and reload the internals pointer (either from a capsule or by
creating a new internals instance).

(No issue number: this was reported on gitter by @henryiii and @aoloe).
2018-01-11 19:46:10 -04:00
Jason Rhinelander
3be401f2a2 Silence new MSVC C++17 deprecation warnings
In the latest MSVC in C++17 mode including Eigen causes warnings:

    warning C4996: 'std::unary_negate<_Fn>': warning STL4008: std::not1(),
    std::not2(), std::unary_negate, and std::binary_negate are deprecated in
    C++17. They are superseded by std::not_fn(). You can define
    _SILENCE_CXX17_NEGATORS_DEPRECATION_WARNING or
    _SILENCE_ALL_CXX17_DEPRECATION_WARNINGS to acknowledge that you have
    received this warning.

This disables 4996 for the Eigen includes.

Catch generates a similar warning for std::uncaught_exception, so
disable the warning there, too.

In both cases this is temporary; we can (and should) remove the warnings
disabling once new upstream versions of Eigen and Catch are available
that address the warning. (The Catch one, in particular, looks to be
fixed in upstream master, so will probably be fixed in the next (2.0.2)
release).
2017-12-23 09:00:45 -04:00
Jason Rhinelander
835fa9bcc6 Miscellaneous travis-ci updates/fixes
- For the debian/buster docker build (GCC 7/C++17) install and use the
  system `catch` package; this also renames "COMPILER_PACKAGES" to
  "EXTRA_PACKAGES" since it now contains a non-compiler package.

- Add a status message indicating the catch version being used for
  compiling the embedded tests

- Simplify some bash code by using VAR+=" foo" to append (rather than
  VAR="${VAR} foo"

- Fix CMAKE_INCLUDE_PATH appending: it was prepending the ':' but not
  the existing $CMAKE_INCLUDE_PATH value and so would end up with
  ":/eigen-path" if CMAKE_INCLUDE_PATH was already set.  (This wasn't
  bug that was actually noticed since currently nothing else sets it).
2017-10-22 13:33:58 -03:00
Gunnar Läthén
c64e6b1670 Added function for reloading module (#1040) 2017-09-12 08:05:05 +02:00
Dean Moldovan
cd2d3ad5df Fix embedded threads test on MSVC2015 / Python 2.7 2017-06-24 21:59:55 +02:00
Dean Moldovan
2d6116b53f Fix GIL release and acquire when embedding the interpreter
Fixes a race condition when multiple threads try to acquire the GIL
before `detail::internals` have been initialized. `gil_scoped_release`
is now tasked with initializing `internals` (guaranteed single-threaded)
to ensure the safety of subsequent `acquire` calls from multiple threads.
2017-06-24 14:03:42 +02:00
Jason Rhinelander
4edb1ce20c Destroy internals if created during Py_Finalize()
Py_Finalize could potentially invoke code that calls `get_internals()`,
which could create a new internals object if one didn't exist.
`finalize_interpreter()` didn't catch this because it only used the
pre-finalize interpreter pointer status; if this happens, it results in
the internals pointer not being properly destroyed with the interpreter,
which leaks, and also causes a `get_internals()` under a future
interpreter to return an internals object that is wrong in various ways.
2017-06-08 16:42:06 -03:00
Dean Moldovan
1d3c4bc54d Fix missing default globals in eval/exec when embedding
Fixes #887.
2017-06-07 11:44:30 +02:00
Dean Moldovan
931b9e93ab Support restarting the interpreter and subinterpreters 2017-05-28 02:12:24 +02:00
Dean Moldovan
22c413b196 Add C++ interface for the Python interpreter 2017-05-28 02:12:24 +02:00
Dean Moldovan
9693a5c78f Add Catch framework for testing embedding support and C++-side features
At this point, there is only a single test for interpreter basics.

Apart from embedding itself, having a C++ test framework will also
benefit the C++-side features by allowing them to be tested directly.
2017-05-28 02:12:24 +02:00