Commit Graph

104 Commits

Author SHA1 Message Date
Ralf W. Grosse-Kunstleve 27ce64fc43 Merge branch 'master' into sh_merge_master 2022-07-09 21:47:49 -07:00
pre-commit-ci[bot] c42e3ab793
[pre-commit.ci] pre-commit autoupdate (#4041)
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/psf/black: 22.3.0 → 22.6.0](https://github.com/psf/black/compare/22.3.0...22.6.0)
- [github.com/Lucas-C/pre-commit-hooks: v1.2.0 → v1.3.0](https://github.com/Lucas-C/pre-commit-hooks/compare/v1.2.0...v1.3.0)
- [github.com/PyCQA/pylint: v2.14.3 → v2.14.4](https://github.com/PyCQA/pylint/compare/v2.14.3...v2.14.4)
- [github.com/pre-commit/mirrors-clang-format: v14.0.5 → v14.0.6](https://github.com/pre-commit/mirrors-clang-format/compare/v14.0.5...v14.0.6)

* Update blacken-docs

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
2022-07-04 22:21:59 -04:00
Ralf W. Grosse-Kunstleve cad2609381 Merge branch 'master' into smart_holder 2022-06-27 22:24:23 -07:00
pre-commit-ci[bot] dd3bf7fd12
[pre-commit.ci] pre-commit autoupdate (#4030)
updates:
- [github.com/hadialqattan/pycln: v1.3.3 → v1.3.5](https://github.com/hadialqattan/pycln/compare/v1.3.3...v1.3.5)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-06-27 19:39:19 -04:00
pre-commit-ci[bot] 2ad974c945
[pre-commit.ci] pre-commit autoupdate (#4021)
updates:
- [github.com/PyCQA/pylint: v2.14.1 → v2.14.3](https://github.com/PyCQA/pylint/compare/v2.14.1...v2.14.3)
- [github.com/pre-commit/mirrors-clang-format: v14.0.4-1 → v14.0.5](https://github.com/pre-commit/mirrors-clang-format/compare/v14.0.4-1...v14.0.5)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-06-21 14:36:49 -04:00
pre-commit-ci[bot] 21f0e72b0f
[pre-commit.ci] pre-commit autoupdate (#4003) 2022-06-13 21:02:25 -04:00
pre-commit-ci[bot] c5fa3436c6
[pre-commit.ci] pre-commit autoupdate (#3951)
updates:
- [github.com/asottile/pyupgrade: v2.32.1 → v2.33.0](https://github.com/asottile/pyupgrade/compare/v2.32.1...v2.33.0)
- [github.com/Lucas-C/pre-commit-hooks: v1.1.13 → v1.2.0](https://github.com/Lucas-C/pre-commit-hooks/compare/v1.1.13...v1.2.0)
- [github.com/hadialqattan/pycln: v1.3.2 → v1.3.3](https://github.com/hadialqattan/pycln/compare/v1.3.2...v1.3.3)
- [github.com/PyCQA/pylint: v2.13.8 → v2.14.1](https://github.com/PyCQA/pylint/compare/v2.13.8...v2.14.1)
- [github.com/pre-commit/mirrors-mypy: v0.950 → v0.960](https://github.com/pre-commit/mirrors-mypy/compare/v0.950...v0.960)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-06-06 17:56:18 -04:00
Ralf W. Grosse-Kunstleve bdf22c8ee7 Merge branch 'master' into sh_merge_master 2022-05-17 16:37:59 -07:00
pre-commit-ci[bot] ad146b2a18
[pre-commit.ci] pre-commit autoupdate (#3933)
updates:
- [github.com/asottile/pyupgrade: v2.32.0 → v2.32.1](https://github.com/asottile/pyupgrade/compare/v2.32.0...v2.32.1)
- [github.com/pre-commit/mirrors-clang-format: v14.0.1 → v14.0.3](https://github.com/pre-commit/mirrors-clang-format/compare/v14.0.1...v14.0.3)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-05-09 18:44:21 -04:00
Ralf W. Grosse-Kunstleve d5125eaf1e Merge branch 'master' into sh_merge_master 2022-05-05 16:12:58 -07:00
pre-commit-ci[bot] 9a16e55ad2
[pre-commit.ci] pre-commit autoupdate (#3903)
updates:
- [github.com/hadialqattan/pycln: v1.3.1 → v1.3.2](https://github.com/hadialqattan/pycln/compare/v1.3.1...v1.3.2)
- [github.com/PyCQA/pylint: v2.13.5 → v2.13.8](https://github.com/PyCQA/pylint/compare/v2.13.5...v2.13.8)
- [github.com/pre-commit/mirrors-mypy: v0.942 → v0.950](https://github.com/pre-commit/mirrors-mypy/compare/v0.942...v0.950)
2022-05-05 15:02:16 -04:00
Ralf W. Grosse-Kunstleve 2ee1e6445d Merge branch 'master' into sh_merge_master 2022-05-02 12:41:48 -07:00
pre-commit-ci[bot] e8e229fa0b
[pre-commit.ci] pre-commit autoupdate (#3885)
updates:
- [github.com/hadialqattan/pycln: v1.2.5 → v1.3.1](https://github.com/hadialqattan/pycln/compare/v1.2.5...v1.3.1)
- [github.com/pre-commit/mirrors-clang-format: v13.0.1 → v14.0.1](https://github.com/pre-commit/mirrors-clang-format/compare/v13.0.1...v14.0.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-04-18 17:44:01 -04:00
Ralf W. Grosse-Kunstleve ab41fa281c Merge branch 'master' into sh_merge_master 2022-04-12 15:48:59 -07:00
pre-commit-ci[bot] ad0de0f5a6
[pre-commit.ci] pre-commit autoupdate (#3863)
updates:
- [github.com/pre-commit/pre-commit-hooks: v4.1.0 → v4.2.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.1.0...v4.2.0)
- [github.com/asottile/pyupgrade: v2.31.1 → v2.32.0](https://github.com/asottile/pyupgrade/compare/v2.31.1...v2.32.0)
- [github.com/PyCQA/pylint: v2.13.4 → v2.13.5](https://github.com/PyCQA/pylint/compare/v2.13.4...v2.13.5)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-04-11 19:50:42 -04:00
Henry Schreiner 9969f3b5b5
ci: drop win2016 (#3854)
* ci: drop dead windows CI jobs

* chore: touch up pre-commit

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

* Update configure.yml

* Update configure.yml
2022-04-11 16:54:33 -04:00
pre-commit-ci[bot] f2f0c69096
[pre-commit.ci] pre-commit autoupdate (#3848)
updates:
- [github.com/PyCQA/pylint: v2.13.2 → v2.13.4](https://github.com/PyCQA/pylint/compare/v2.13.2...v2.13.4)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-04-04 17:56:42 -04:00
Ralf W. Grosse-Kunstleve 4db19272cb Merge branch 'master' into sh_merge_master 2022-03-30 19:33:07 -07:00
Henry Schreiner 42d8593ad4
style: bump black (#3831)
* style: bump black

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

* fix: pycln broken by typer breakage
2022-03-28 17:24:59 -04:00
Ralf W. Grosse-Kunstleve 08ea85b0ac Merge branch 'master' into sh_merge_master 2022-03-21 22:59:39 -07:00
pre-commit-ci[bot] 67089cd3e6
[pre-commit.ci] pre-commit autoupdate (#3817)
updates:
- [github.com/pre-commit/mirrors-mypy: v0.940 → v0.941](https://github.com/pre-commit/mirrors-mypy/compare/v0.940...v0.941)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-03-21 20:47:02 -04:00
pre-commit-ci[bot] ed1407372d [pre-commit.ci] pre-commit autoupdate (#3800)
updates:
- [github.com/asottile/pyupgrade: v2.31.0 → v2.31.1](https://github.com/asottile/pyupgrade/compare/v2.31.0...v2.31.1)
- [github.com/sirosen/texthooks: 0.2.2 → 0.3.1](https://github.com/sirosen/texthooks/compare/0.2.2...0.3.1)
- [github.com/hadialqattan/pycln: v1.2.4 → v1.2.5](https://github.com/hadialqattan/pycln/compare/v1.2.4...v1.2.5)
- [github.com/pre-commit/mirrors-mypy: v0.931 → v0.940](https://github.com/pre-commit/mirrors-mypy/compare/v0.931...v0.940)
- [github.com/mgedmin/check-manifest: 0.47 → 0.48](https://github.com/mgedmin/check-manifest/compare/0.47...0.48)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-03-18 11:15:52 -07:00
pre-commit-ci[bot] f8a532a7de
[pre-commit.ci] pre-commit autoupdate (#3800)
updates:
- [github.com/asottile/pyupgrade: v2.31.0 → v2.31.1](https://github.com/asottile/pyupgrade/compare/v2.31.0...v2.31.1)
- [github.com/sirosen/texthooks: 0.2.2 → 0.3.1](https://github.com/sirosen/texthooks/compare/0.2.2...0.3.1)
- [github.com/hadialqattan/pycln: v1.2.4 → v1.2.5](https://github.com/hadialqattan/pycln/compare/v1.2.4...v1.2.5)
- [github.com/pre-commit/mirrors-mypy: v0.931 → v0.940](https://github.com/pre-commit/mirrors-mypy/compare/v0.931...v0.940)
- [github.com/mgedmin/check-manifest: 0.47 → 0.48](https://github.com/mgedmin/check-manifest/compare/0.47...0.48)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-03-15 10:18:12 -04:00
Ralf W. Grosse-Kunstleve eb6edd9fac Merge branch 'master' into sh_merge_master 2022-03-10 10:32:48 -08:00
pre-commit-ci[bot] 061c617707
[pre-commit.ci] pre-commit autoupdate (#3765)
updates:
- [github.com/Lucas-C/pre-commit-hooks: v1.1.12 → v1.1.13](https://github.com/Lucas-C/pre-commit-hooks/compare/v1.1.12...v1.1.13)
- [github.com/hadialqattan/pycln: v1.2.0 → v1.2.4](https://github.com/hadialqattan/pycln/compare/v1.2.0...v1.2.4)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-02-28 21:35:43 -05:00
Ralf W. Grosse-Kunstleve be43439670 Merge branch 'master' into sh_merge_master 2022-02-23 15:47:03 -08:00
pre-commit-ci[bot] 91f597be5a
[pre-commit.ci] pre-commit autoupdate (#3754)
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/hadialqattan/pycln: v1.1.0 → v1.2.0](https://github.com/hadialqattan/pycln/compare/v1.1.0...v1.2.0)
- [github.com/pre-commit/mirrors-clang-format: v13.0.0 → v13.0.1](https://github.com/pre-commit/mirrors-clang-format/compare/v13.0.0...v13.0.1)

* Update .pre-commit-config.yaml

* ci: specify which windows image to use

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
2022-02-23 17:56:41 -05:00
Ralf W. Grosse-Kunstleve bc2cec0783 Merge branch 'master' into sh_merge_master 2022-02-16 07:15:34 -08:00
Henry Schreiner 4b42c37191
style: pylint (#3720)
* fix: add pylint and fix issue

* chore: add pylint to pre-commit

* fix: local variable warning surfaced mistake in intree
2022-02-15 17:48:33 -05:00
pre-commit-ci[bot] 0986af6182
[pre-commit.ci] pre-commit autoupdate (#3672)
updates:
- [github.com/Lucas-C/pre-commit-hooks: v1.1.11 → v1.1.12](https://github.com/Lucas-C/pre-commit-hooks/compare/v1.1.11...v1.1.12)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-02-15 11:27:00 -05:00
Ralf W. Grosse-Kunstleve d5e302ce46 Removing uses of env.PY2 and env.PY (no longer available).
smart_holder_type_casters.h tweaks:
    * Removing MSVC 2015 workaround.
    * Manually adding braces to pre-empt clang-tidy issue (involving `#ifdef`).
    * Removing `// clang-format off` & `on`.
    * One manual line break (moving comment above line).

Adding mypy type information for ubench/*.py
2022-02-14 18:51:58 -08:00
Ralf W. Grosse-Kunstleve e1751c04f0 Merge branch 'master' into sh_merge_master_after_clang-format_etc
First pass manually resolving the many merge conflicts.
2022-02-14 14:36:08 -08:00
Henry Schreiner 522c59ceb2
chore: drop Python 3.5 (#3719)
* chore: drop Python 3.5 support

* chore: more fstrings with flynt's help

* ci: drop Python 3.5

* chore: bump dependency versions

* docs: touch up py::args

* tests: remove deprecation warning

* Ban smartquotes

* Very minor tweaks (by-product of reviewing PR #3719).

Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
2022-02-11 19:06:16 -05:00
Ralf W. Grosse-Kunstleve 6493f496e3
Python 2 removal part 1: tests (C++ code is intentionally ~untouched) (#3688)
* `#error BYE_BYE_GOLDEN_SNAKE`

* Removing everything related to 2.7 from ci.yml

* Commenting-out Centos7

* Removing `PYTHON: 27` from .appveyor.yml

* "PY2" removal, mainly from tests. C++ code is not touched.

* Systematic removal of `u` prefix from `u"..."` and `u'...'` literals. Collateral cleanup of a couple minor other things.

* Cleaning up around case-insensitive hits for `[^a-z]py.*2` in tests/.

* Removing obsolete Python 2 mention in compiling.rst

* Proper `#error` for Python 2.

* Using PY_VERSION_HEX to guard `#error "PYTHON 2 IS NO LONGER SUPPORTED.`

* chore: bump pre-commit

* style: run pre-commit for pyupgrade 3+

* tests: use sys.version_info, not PY

* chore: more Python 2 removal

* Uncommenting Centos7 block (PR #3691 showed that it is working again).

* Update pre-commit hooks

* Fix pre-commit hook

* refactor: remove Python 2 from CMake

* refactor: remove Python 2 from setup code

* refactor: simplify, better static typing

* feat: fail with nice messages

* refactor: drop Python 2 C++ code

* docs: cleanup for Python 3

* revert: intree

revert: intree

* docs: minor touchup to py2 statement

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
2022-02-10 18:28:08 -08:00
Ralf W. Grosse-Kunstleve ec24786eab
Fully-automatic clang-format with include reordering (#3713)
* chore: add clang-format

* Removing check-style (Classic check-style)

Ported from @henryiii's 53056b1b0e

* Automatic clang-format changes (NO manual changes).

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2022-02-10 12:17:07 -08:00
Ralf W. Grosse-Kunstleve ea0c1e77c8 Merge branch 'master' into sh_merge_master 2022-01-11 17:48:37 -08:00
pre-commit-ci[bot] b66328b043
[pre-commit.ci] pre-commit autoupdate (#3609)
updates:
- [github.com/pre-commit/mirrors-mypy: v0.930 → v0.931](https://github.com/pre-commit/mirrors-mypy/compare/v0.930...v0.931)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-01-10 21:13:24 -05:00
Ralf W. Grosse-Kunstleve 73197b392a Merge branch 'master' into smart_holder 2022-01-03 15:56:25 -08:00
pre-commit-ci[bot] 2cd32e5d54
[pre-commit.ci] pre-commit autoupdate (#3589)
updates:
- [github.com/asottile/pyupgrade: v2.29.1 → v2.31.0](https://github.com/asottile/pyupgrade/compare/v2.29.1...v2.31.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-01-03 15:55:21 -08:00
Ralf W. Grosse-Kunstleve 388c03b18c Merge branch 'master' into sh_merge_master_clean 2021-12-29 13:24:20 -08:00
pre-commit-ci[bot] 89769e6e6d
[pre-commit.ci] pre-commit autoupdate (#3574)
updates:
- [github.com/pre-commit/pre-commit-hooks: v4.0.1 → v4.1.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.0.1...v4.1.0)
- [github.com/pre-commit/mirrors-mypy: v0.920 → v0.930](https://github.com/pre-commit/mirrors-mypy/compare/v0.920...v0.930)
- [github.com/shellcheck-py/shellcheck-py: v0.8.0.2 → v0.8.0.3](https://github.com/shellcheck-py/shellcheck-py/compare/v0.8.0.2...v0.8.0.3)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2021-12-27 18:28:30 -05:00
pre-commit-ci[bot] d0406c747e
[pre-commit.ci] pre-commit autoupdate (#3563)
updates:
- [github.com/pre-commit/mirrors-mypy: v0.910-1 → v0.920](https://github.com/pre-commit/mirrors-mypy/compare/v0.910-1...v0.920)
- [github.com/shellcheck-py/shellcheck-py: v0.8.0.1 → v0.8.0.2](https://github.com/shellcheck-py/shellcheck-py/compare/v0.8.0.1...v0.8.0.2)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2021-12-20 23:11:48 -05:00
pre-commit-ci[bot] 59aa99860c
[pre-commit.ci] pre-commit autoupdate (#3533)
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/psf/black: 21.11b1 → 21.12b0](https://github.com/psf/black/compare/21.11b1...21.12b0)

* Keep blacken-docs in sync

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
2021-12-06 17:12:03 -05:00
Ralf W. Grosse-Kunstleve e94b98fd76 Merge branch 'master' into smart_holder 2021-11-22 17:03:58 -08:00
pre-commit-ci[bot] fe65693c72
[pre-commit.ci] pre-commit autoupdate (#3500)
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/asottile/pyupgrade: v2.29.0 → v2.29.1](https://github.com/asottile/pyupgrade/compare/v2.29.0...v2.29.1)
- [github.com/psf/black: 21.10b0 → 21.11b1](https://github.com/psf/black/compare/21.10b0...21.11b1)
- [github.com/asottile/blacken-docs: v1.11.0 → v1.12.0](https://github.com/asottile/blacken-docs/compare/v1.11.0...v1.12.0)

* Keep blacken-docs and black in sync.

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Aaron Gokaslan <aaronGokaslan@gmail.com>
2021-11-22 16:25:35 -05:00
Ralf W. Grosse-Kunstleve e57afe23f7 Merge branch 'master' into smart_holder 2021-11-20 09:35:40 -08:00
pre-commit-ci[bot] 9422d98fcc
[pre-commit.ci] pre-commit autoupdate (#3473)
updates:
- [github.com/PyCQA/isort: 5.10.0 → 5.10.1](https://github.com/PyCQA/isort/compare/5.10.0...5.10.1)
- [github.com/shellcheck-py/shellcheck-py: v0.7.2.1 → v0.8.0.1](https://github.com/shellcheck-py/shellcheck-py/compare/v0.7.2.1...v0.8.0.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2021-11-15 22:48:39 -05:00
Ralf W. Grosse-Kunstleve f4fab85d87 Merge branch 'master' into sh_merge_master 2021-11-15 14:43:08 -08:00
Henry Schreiner 270b11d502
Revert "style: drop pycln" (#3466)
* Revert "style: drop pycln (#3397)"

This reverts commit 606f81a966.

* Update .pre-commit-config.yaml
2021-11-13 21:32:58 -05:00
pre-commit-ci[bot] b322018e15
[pre-commit.ci] pre-commit autoupdate (#3449)
updates:
- [github.com/PyCQA/isort: 5.9.3 → 5.10.0](https://github.com/PyCQA/isort/compare/5.9.3...5.10.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2021-11-08 15:56:20 -05:00