Commit Graph

72 Commits

Author SHA1 Message Date
Ralf W. Grosse-Kunstleve
3f35af7441 Adding smart_holder branch to workflow_dispatch in all places where stable appears. 2021-03-18 11:29:22 -07:00
dependabot[bot]
59f8d7f1bf
chore(deps): bump jwlawson/actions-setup-cmake from v1.7 to v1.8 (#2865) 2021-02-17 18:48:37 +00:00
dependabot[bot]
c236239356
chore(deps): bump pypa/gh-action-pypi-publish from v1.4.1 to v1.4.2 (#2851)
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from v1.4.1 to v1.4.2.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.4.1...27b31702a0e7fc50959f5ad993c78deac1bdfc29)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-02-09 17:00:16 -05:00
Kumar Aditya
948d09d6df
test: Test against Python 3.10 (#2848) 2021-02-08 15:35:30 -05:00
dependabot[bot]
42e7380705
chore(deps): bump jwlawson/actions-setup-cmake from v1.6 to v1.7 (#2818)
Bumps [jwlawson/actions-setup-cmake](https://github.com/jwlawson/actions-setup-cmake) from v1.6 to v1.7.
- [Release notes](https://github.com/jwlawson/actions-setup-cmake/releases)
- [Commits](https://github.com/jwlawson/actions-setup-cmake/compare/v1.6...821902fd0e0da89b13fd3161d358e96bf7550883)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-01-25 15:11:18 -05:00
Henry Schreiner
87f5aff4a7
ci: update to setup-cmake v1.6 (#2805) 2021-01-19 18:24:46 -05:00
Michael Kuron
48534089f7
fix: Intel ICC C++17 compatibility (#2729)
* CI: Intel icc/icpc via oneAPI

Add testing for Intel icc/icpc via the oneAPI images.
Intel oneAPI is in a late beta stage, currently shipping
oneAPI beta09 with ICC 20.2.

CI: Skip Interpreter Tests for Intel

Cannot find how to add this, neiter the package `libc6-dev` nor
`intel-oneapi-mkl-devel` help when installed to solve this:
```
-- Looking for C++ include pthread.h
-- Looking for C++ include pthread.h - not found
CMake Error at /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:165 (message):
  Could NOT find Threads (missing: Threads_FOUND)
Call Stack (most recent call first):
  /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:458 (_FPHSA_FAILURE_MESSAGE)
  /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindThreads.cmake:234 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
  tests/test_embed/CMakeLists.txt:17 (find_package)
```

CI: libc6-dev from GCC for ICC

CI: Run bare metal for oneAPI

CI: Ubuntu 18.04 for oneAPI

CI: Intel +Catch -Eigen

CI: CMake from Apt (ICC tests)

CI: Replace Intel Py with GCC Py

CI: Intel w/o GCC's Eigen

CI: ICC with verbose make

[Debug] Find core dump

tests: use arg{} instead of arg() for Intel

tests: adding a few more missing {}

fix: sync with @tobiasleibner's branch

fix: try ubuntu 20-04

fix: drop exit 1

docs: Apply suggestions from code review

Co-authored-by: Tobias Leibner <tobias.leibner@googlemail.com>

Workaround for ICC enable_if issues

Another workaround for ICC's enable_if issues

fix error in previous commit

Disable one test for the Intel compiler in C++17 mode

Add back one instance of py::arg().noconvert()

Add NOLINT to fix clang-tidy check

Work around for ICC internal error in PYBIND11_EXPAND_SIDE_EFFECTS in C++17 mode

CI: Intel ICC with C++17

docs: pybind11/numpy.h does not require numpy at build time. (#2720)

This is nice enough to be mentioned explicitly in the docs.

docs: Update warning about Python 3.9.0 UB, now that 3.9.1 has been released (#2719)

Adjusting `type_caster<std::reference_wrapper<T>>` to support const/non-const propagation in `cast_op`. (#2705)

* Allow type_caster of std::reference_wrapper<T> to be the same as a native reference.

Before, both std::reference_wrapper<T> and std::reference_wrapper<const T> would
invoke cast_op<type>. This doesn't allow the type_caster<> specialization for T
to distinguish reference_wrapper types from value types.

After, the type_caster<> specialization invokes cast_op<type&>, which allows
reference_wrapper to behave in the same way as a native reference type.

* Add tests/examples for std::reference_wrapper<const T>

* Add tests which use mutable/immutable variants

This test is a chimera; it blends the pybind11 casters with a custom
pytype implementation that supports immutable and mutable calls.

In order to detect the immutable/mutable state, the cast_op needs
to propagate it, even through e.g. std::reference<const T>

Note: This is still a work in progress; some things are crashing,
which likely means that I have a refcounting bug or something else
missing.

* Add/finish tests that distinguish const& from &

Fixes the bugs in my custom python type implementation,
demonstrate test that requires const& and reference_wrapper<const T>
being treated differently from Non-const.

* Add passing a const to non-const method.

* Demonstrate non-const conversion of reference_wrapper in tests.

Apply formatting presubmit check.

* Fix build errors from presubmit checks.

* Try and fix a few more CI errors

* More CI fixes.

* More CI fixups.

* Try and get PyPy to work.

* Additional minor fixups. Getting close to CI green.

* More ci fixes?

* fix clang-tidy warnings from presubmit

* fix more clang-tidy warnings

* minor comment and consistency cleanups

* PyDECREF -> Py_DECREF

* copy/move constructors

* Resolve codereview comments

* more review comment fixes

* review comments: remove spurious &

* Make the test fail even when the static_assert is commented out.

This expands the test_freezable_type_caster a bit by:
1/ adding accessors .is_immutable and .addr to compare identity
from python.
2/ Changing the default cast_op of the type_caster<> specialization
to return a non-const value. In normal codepaths this is a reasonable
default.
3/ adding roundtrip variants to exercise the by reference, by pointer
and by reference_wrapper in all call paths.  In conjunction with 2/, this
demonstrates the failure case of the existing std::reference_wrpper conversion,
which now loses const in a similar way that happens when using the default cast_op_type<>.

* apply presubmit formatting

* Revert inclusion of test_freezable_type_caster

There's some concern that this test is a bit unwieldly because of the use
of the raw <Python.h> functions. Removing for now.

* Add a test that validates const references propagation.

This test verifies that cast_op may be used to correctly detect
const reference types when used with std::reference_wrapper.

* mend

* Review comments based changes.

1. std::add_lvalue_reference<type> -> type&
2. Simplify the test a little more; we're never returning the ConstRefCaster
type so the class_ definition can be removed.

* formatted files again.

* Move const_ref_caster test to builtin_casters

* Review comments: use cast_op and adjust some comments.

* Simplify ConstRefCasted test

I like this version better as it moves the assertion that matters
back into python.

ci: drop pypy2 linux, PGI 20.7, add Python 10 dev (#2724)

* ci: drop pypy2 linux, add Python 10 dev

* ci: fix mistake

* ci: commented-out PGI 20.11, drop 20.7

fix: regression with installed pybind11 overriding local one (#2716)

* fix: regression with installed pybind11 overriding discovered one

Closes #2709

* docs: wording incorrect

style: remove redundant instance->owned = true (#2723)

which was just before set to True in instance->allocate_layout()

fix: also throw in the move-constructor added by the PYBIND11_OBJECT macro, after the argument has been moved-out (if necessary) (#2701)

Make args_are_all_* ICC workarounds unconditional

Disable test_aligned on Intel ICC

Fix test_aligned on Intel ICC

Skip test_python_alreadyset_in_destructor on Intel ICC

Fix test_aligned again

ICC CI: Downgrade pytest

pytest 6 does not capture the `discard_as_unraisable` stderr and
just writes a warning with its content instead.

* refactor: simpler Intel workaround, suggested by @laramiel

* fix: try version with impl to see if it is easier to compile

* docs: update README for ICC

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2021-01-17 19:53:07 -05:00
Axel Huebl
0b3df7f964
ci: Intel icc/icpc via oneAPI (#2573)
* CI: Intel icc/icpc via oneAPI

Add testing for Intel icc/icpc via the oneAPI images.
Intel oneAPI is in a late beta stage, currently shipping
oneAPI beta09 with ICC 20.2.

* CI: Skip Interpreter Tests for Intel

Cannot find how to add this, neiter the package `libc6-dev` nor
`intel-oneapi-mkl-devel` help when installed to solve this:
```
-- Looking for C++ include pthread.h
-- Looking for C++ include pthread.h - not found
CMake Error at /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:165 (message):
  Could NOT find Threads (missing: Threads_FOUND)
Call Stack (most recent call first):
  /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:458 (_FPHSA_FAILURE_MESSAGE)
  /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindThreads.cmake:234 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
  tests/test_embed/CMakeLists.txt:17 (find_package)
```

* CI: libc6-dev from GCC for ICC

* CI: Run bare metal for oneAPI

* CI: Ubuntu 18.04 for oneAPI

* CI: Intel +Catch -Eigen

* CI: CMake from Apt (ICC tests)

* CI: Replace Intel Py with GCC Py

* CI: Intel w/o GCC's Eigen

* CI: ICC with verbose make

* [Debug] Find core dump

* tests: use arg{} instead of arg() for Intel

* tests: adding a few more missing {}

* fix: sync with @tobiasleibner's branch

* fix: try ubuntu 20-04

* fix: drop exit 1

* style: clang tidy fix

* style: fix missing NOLINT

* ICC: Update Compiler Name

Changed upstream with the last oneAPI release.

* ICC CI: Downgrade pytest

pytest 6 does not capture the `discard_as_unraisable` stderr and
just writes a warning with its content instead.

* Use new test pinning requirements.txt

* tests: add notes about intel, cleanup

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2021-01-15 15:59:47 -05:00
Yannick Jadoul
0f8d5f2eb6
Add a Valgrind build on debug Python 3.9 (#2746)
* Adding a valgrind build on debug Python 3.9

Co-authored-by: Boris Staletic <boris.staletic@gmail.com>

* Add Valgrind suppression files

- Introduce suppression file, populate it with a first suppression taken from CPython, and fix one leak in the tests
- Suppress leak in NumPy
- More clean tests!
- Tests with names a-e passing (except for test_buffer)
- Suppress multiprocessing errors
- Merge multiprocessing suppressions into other suppression files
- Numpy seems to be spelled with a big P
- Append single entry from valgrind-misc.supp to valgrind-python.supp, and make clear valgrind-python.supp is only CPython

Co-authored-by: Boris Staletic <boris.staletic@gmail.com>

* Enable test_virtual_functions with a workaround

* Add a memcheck cmake target

- Add a memcheck cmake target
- Reformat cmake
- Appease the formatting overlords - they are angry
- Format CMake valgrind target decently

* Update CI config to new action versions

* fix: separate memcheck from pytest

* ci: cleanup

* Merge Valgrind and other deadsnakes builds

Co-authored-by: Boris Staletic <boris.staletic@gmail.com>
Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2021-01-15 21:07:31 +01:00
Yannick Jadoul
f243450e89
ci: disable builds for 3.10.0a4, and enable a nightly 3.10-dev build (#2792)
* Disable builds for 3.10.0a4, and enable a nightly 3.10-dev build

* Fix job name

* Remove deadsnakes job for now

* Add deadsnakes jobs

* There's no deadsnakes 2.7

* Add 3.10 to versions to be discovered by legacy FindPython, and fix debug input to deadsnakes/action

* Try out branch with fix

* Update to deadsnakes/action@v2.1.1
2021-01-13 23:13:19 -05:00
Henry Schreiner
5abce7fce2
ci: use fixed action (#2791) 2021-01-13 20:32:11 +01:00
Yannick Jadoul
7b7ec664b7
ci: pin CMake to 3.19.2, fixes issues with 3.19.3 on Linux (aarch64) and macOS (universal) (#2790) 2021-01-13 11:16:35 -05:00
Henry Schreiner
d5af536fa1
ci: update cmake action (#2734) 2020-12-21 20:58:40 -05:00
Ralf W. Grosse-Kunstleve
cecdfadc58
minor cleanup: fixing or silencing flake8 errors (#2731)
* minor cleanup: fixing or silencing flake8 errors

* ci: lock CMake to non-Universal version

* Update .github/workflows/ci.yml

Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
2020-12-18 19:41:43 -05:00
Henry Schreiner
499fcd5447
ci: drop pypy2 linux, PGI 20.7, add Python 10 dev (#2724)
* ci: drop pypy2 linux, add Python 10 dev

* ci: fix mistake

* ci: commented-out PGI 20.11, drop 20.7
2020-12-15 21:07:41 -05:00
Henry Schreiner
de78bddd7f
docs: better badges (#2656) 2020-11-15 12:23:33 -05:00
Robert Haschke
b72cebeb22
style: clang-tidy: modernize-use-using (#2645)
* style: clang-tidy: modernize-use-using

* style: more clang-tidy checking

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2020-11-09 10:10:19 -08:00
Henry Schreiner
6d4854a501 ci: correct types statement 2020-11-03 11:59:29 -05:00
Henry Schreiner
6cc233cc32 ci: label PRs when merged only for now 2020-11-03 11:49:45 -05:00
Henry Schreiner
139c05dafa
ci: test on NumPy + Python 3.9 (#2628) 2020-10-29 09:56:00 -04:00
Henry Schreiner
ace4deb4f0
ci: add more jobs (#2610)
* ci: add more jobs

* ci: minor trimdown
2020-10-22 22:34:44 -04:00
Henry Schreiner
8ae11fbf88 ci: add more runs 2020-10-15 17:38:49 -04:00
Yannick Jadoul
493649f965
fix: valgrind-detected after-freeing access of PyMethodDef (macOS Python 3.9.0 segfaults) (#2576)
* Check if valgrind-detected after-freeing access of PyMethodDef causes macOS Python 3.9 segfaults

* fix: only apply leak on 3.9.0

* fix: faster check

* fix: better naming thanks to @bstaletic

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2020-10-14 14:11:09 -04:00
Henry Schreiner
526a7733c7
ci: merged labels still missing 2020-10-13 19:59:51 -04:00
Henry Schreiner
7c71dd3861 ci: inverted labeler logic 2020-10-12 23:04:24 -04:00
Henry Schreiner
2f746eeeb4 ci: original labeler 2020-10-12 22:35:23 -04:00
Henry Schreiner
fae45325f6 ci: fix labeler 2020-10-09 16:40:12 -04:00
andriish
59323a975a
ci: update PGI to 20.9 (#2566)
* Update PGI to 20.9

Update PGI to 20.9

* Update ci.yml

* Update ci.yml

* Update README.rst

* Update ci.yml

Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
2020-10-09 15:38:26 -04:00
Henry Schreiner
e4e5c49a26
docs: known issues (#2565)
* docs: FAQ CMake updates

* docs: limitations

* ci: don't over label

* docs: update CHANGELOG, add a bit more structure

* ci: label PRs with more labels, and sooner

* docs: updates from @rwgk

* docs: address @YannickJadoul's points
2020-10-09 11:19:13 -04:00
Henry Schreiner
deba040b6f
test: hide segfault (#2559)
* tests: Don't run tests that often segfault

* tests: drop all cross module gil tests

* tests: try skipping all macOS Python 3.9 tests

* tests: drop macOS Python 3.9
2020-10-08 12:25:04 -04:00
Henry Schreiner
49c389b760
ci: test on Windows 3.8 and 3.9 (mostly) (#2560)
* ci: skip cpptest on Win Py 3.8+

* docs: minor typo caught by @rwgk
2020-10-08 09:04:02 -04:00
Henry Schreiner
b6f37f67ac
docs: minor cleanup (#2555)
* docs: minor cleanup

* ci: fix add-path command

* docs: add example of use in-place

* Update .github/workflows/ci.yml
2020-10-07 20:41:03 -04:00
Henry Schreiner
00edc3001b
fix: PYBIND11_OBJECT required pybind11 namespace (regression) (#2553)
* fix: PYBIND11_OBJECT could only be used inside the pybind11 namespace (regression)

* docs: add changelog for conversion protection change

* ci: update to Python 3.9
2020-10-06 10:04:13 -04:00
Henry Schreiner
2a2f52201d
fix: find_import didn't work properly for classic tools (#2550)
* fix: find_import didn't work properly for classic tools

* ci: fix all files not being checked in style run
2020-10-05 15:31:00 -04:00
Henry Schreiner
ca4127ce07
ci: fix labeler 2020-10-02 17:09:58 -04:00
Henry Schreiner
1bcd5f0a19
Update pr_merged.yml 2020-10-02 16:59:04 -04:00
Henry Schreiner
5f9b16672f
ci: label PRs with changelog needed (#2546) 2020-10-02 16:56:19 -04:00
Henry Schreiner
01ad89209a ci: publish in two steps 2020-09-30 17:46:55 -04:00
Henry Schreiner
1994691a9c
ci: download artifact issue 2020-09-30 17:05:32 -04:00
Henry Schreiner
82dbc5b78f
ci: releases (#2530)
* ci: releases

* docs: minor update form @wjakob

* fix: enforce reasonable version of setuptools
2020-09-30 15:48:08 -04:00
Henry Schreiner
8fa70e7483
ci: fix broken documenation test (works on RtD) (#2506)
* ci: fix broken documenation test (works on RtD)

* docs: docs link incorrect
2020-09-17 21:18:15 -04:00
Henry Schreiner
fd61f5038e
feat: setup.py redesign and helpers (#2433)
* feat: setup.py redesign and helpers

* refactor: simpler design with two outputs

* refactor: helper file update and Windows support

* fix: review points from @YannickJadoul

* refactor: fixes to naming and more docs

* feat: more customization points

* feat: add entry point pybind11-config

* refactor: Try Extension-focused method

* refactor: rename alt/inplace to global

* fix: allow usage with git modules, better docs

* feat: global as an extra (@YannickJadoul's suggestion)

* feat: single version location

* fix: remove the requirement that setuptools must be imported first

* fix: some review points from @wjacob

* fix: use .in, add procedure to docs

* refactor: avoid monkeypatch copy

* docs: minor typos corrected

* fix: minor points from @YannickJadoul

* fix: typo on Windows C++ mode

* fix: MSVC 15 update 3+ have c++14 flag

See <https://docs.microsoft.com/en-us/cpp/build/reference/std-specify-language-standard-version?view=vs-2019>

* docs: discuss making SDists by hand

* ci: use pep517.build instead of manual setup.py

* refactor: more comments from @YannickJadoul

* docs: updates from @ktbarrett

* fix: change to newly recommended tool instead of pep517.build

This was intended as a proof of concept; build seems to be the correct replacement.

See https://github.com/pypa/pep517/pull/83

* docs: updates from @wjakob

* refactor: dual version locations

* docs: typo spotted by @wjakob
2020-09-16 17:13:41 -04:00
Henry Schreiner
8dc31c7b29 style: clang-tidy: llvm-namespace-comment 2020-09-15 09:56:59 -04:00
andriish
38370a87f4
fix: support NVIDIA-PGI HPC SDK (#2475)
* Added guards to the includes

Added new CI config

Added new trigger

Changed CI workflow name

Debug CI

Debug CI

Debug CI

Debug CI

Added flags fro PGI

Disable Eigen

Removed tests that fail

Uncomment lines

* fix: missing include

fix: minor style cleanup

tests: support skipping

ci: remove and tighten a bit

fix: try msvc workaround for pgic

* tests: split up prealoc tests

* fix: PGI compiler fix

* fix: PGI void_t only

* fix: try to appease nvcc

* ci: better ordering for slow tests

* ci: minor improvements to testing

* ci: Add NumPy to testing

* ci: Eigen generates CUDA warnings / PGI errors

* Added CentOS7 back for a moment

* Fix YAML

* ci: runs-on missing

* centos7 is missing pytest

* ci: use C++11 on CentOS 7

* ci: test something else

* Try just adding flags on CentOS 7

* fix: CentOS 7

* refactor: move include to shared location

* Added verbose flag

* Try to use system cmake3 on CI

* Try to use system cmake3 on CI, attempt2

* Try to use system cmake3 on CI, attempt3

* tests: not finding pytest should be a warning, not a fatal error

* tests: cleanup

* Weird issue?

* fix: final polish

Co-authored-by: Andrii Verbytskyi <andrii.verbytskyi@mpp.mpg.de>
Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
Co-authored-by: Andrii Verbytskyi <averbyts@cern.ch>
2020-09-11 22:06:52 -04:00
Henry Schreiner
621906b3e7
fix: support nvcc and test (#2461)
* fix: support nvcc and test

* fixup! fix: support nvcc and test

* docs: mention what compilers fail

* fix: much simpler logic

* refactor: slightly faster / clearer
2020-09-10 11:49:26 -04:00
Henry Schreiner
37f845a1dc
ci: disallow some common capitalization mistakes (#2472)
* ci: only annotate linux for now

* style: block some common mistakes
2020-09-08 15:26:50 +02:00
Henry Schreiner
5b59b7b263
ci: gha annotations (#2427) 2020-08-24 18:04:37 -04:00
Yannick Jadoul
43f390ad85
Add note that VS2017 requires /permissive- to build in C++17 mode (#2431)
* Add note that VS2017 requires /permissive- to build in C++17 mode

* ci: test C++17 on MSVC 2017

* ci: args1/2, use args to override max cxx

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2020-08-24 14:31:20 -04:00
Henry Schreiner
2fa18431ce docs: pin versions for readthedocs 2020-08-20 14:42:00 -04:00
Henry Schreiner
04fdc44f50
tests: avoid putting build products into source directory (#2353)
* tests: keep source dir clean

* ci: make first build inplace

* ci: drop dev setting (wasn't doing anything)

* tests: warn if source directory is dirty
2020-08-19 13:11:57 -04:00