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42 Commits

Author SHA1 Message Date
Ralf W. Grosse-Kunstleve
eb510d5131 Merge branch 'master' into sh_merge_master 2023-06-17 07:13:12 -07:00
Ralf W. Grosse-Kunstleve
849322806c
Systematically add PIP_BREAK_SYSTEM_PACKAGES to all .yml files from which pip is called. (#4705) 
* Systematically add PIP_BREAK_SYSTEM_PACKAGES to all .yml files from which pip is called.

* Try gcc:10-bullseye (because gcc:10 is broken: https://github.com/docker-library/gcc/issues/95)

* bug fix (matrix did not work as hoped)
 2023-06-17 07:02:23 -07:00
Ralf W. Grosse-Kunstleve
6acda67f62 Merge branch 'master' into sh_merge_master 2023-05-16 07:55:38 -07:00
Joyce
d72ffb448c
ci: set minimal permissions to github workflows (#4665) 
* set ci.yml minimal permissions

Signed-off-by: Joyce <joycebrum@google.com>

* set configure.yml minimal permissions

Signed-off-by: Joyce <joycebrum@google.com>

* set format.yml minimal permissions

Signed-off-by: Joyce <joycebrum@google.com>

* set pip.yml minimal permissions

Signed-off-by: Joyce <joycebrum@google.com>

* set upstream.yml minimal permissions

Signed-off-by: Joyce <joycebrum@google.com>

* set labeler.yml minimal permissions

Signed-off-by: Joyce <joycebrum@google.com>

* Update ci.yml to read all

Signed-off-by: Joyce <joycebrum@google.com>

* test labeler.yml

Signed-off-by: Joyce <joycebrum@google.com>

* restore the if at labeler.yml

Signed-off-by: Joyce <joycebrum@google.com>

---------

Signed-off-by: Joyce <joycebrum@google.com>
 2023-05-15 13:02:25 -04:00
Ralf W. Grosse-Kunstleve
9651d3bd43 Merge branch 'master' into sh_merge_master 2023-05-04 22:44:29 -07:00
dependabot[bot]
dff75a62bd
chore(deps): bump pypa/gh-action-pypi-publish from 1.8.5 to 1.8.6 (#4650) 
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.5 to 1.8.6.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.5...v1.8.6)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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 2023-05-03 00:34:51 -04:00
Ralf W. Grosse-Kunstleve
c6a4191d15 Merge branch 'master' into smart_holder 2023-04-08 11:59:35 -07:00
dependabot[bot]
ed466da571
chore(deps): bump pypa/gh-action-pypi-publish from 1.8.4 to 1.8.5 (#4604) 
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.4 to 1.8.5.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.4...v1.8.5)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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 2023-04-07 15:52:41 -04:00
Ralf W. Grosse-Kunstleve
fb78376ecd Merge branch 'master' into sh_merge_master 2023-04-06 13:19:17 -07:00
dependabot[bot]
7ab88d2e4f
chore(deps): bump pypa/gh-action-pypi-publish from 1.8.3 to 1.8.4 (#4602) 
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.3 to 1.8.4.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.3...v1.8.4)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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 2023-04-03 10:18:53 -04:00
Ralf W. Grosse-Kunstleve
083a03d122 Merge branch 'master' into sh_merge_master 2023-03-23 17:25:43 -07:00
dependabot[bot]
286873ecf7
chore(deps): bump pypa/gh-action-pypi-publish from 1.8.1 to 1.8.3 (#4584) 
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.1 to 1.8.3.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.1...v1.8.3)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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 2023-03-23 10:23:52 -04:00
Ralf W. Grosse-Kunstleve
945be5bbd9 Merge branch 'master' into sh_merge_master 2023-03-16 21:36:21 -07:00
dependabot[bot]
04ef4e4229
chore(deps): bump pypa/gh-action-pypi-publish from 1.6.4 to 1.8.1 (#4576) 2023-03-16 18:18:44 +00:00
Ralf W. Grosse-Kunstleve
f7587abb94 Revert "Temporarily remove pip.yml, to avoid GHA failures while waiting for a fix on master." 
This reverts commit 3cef809281.
 2023-02-16 15:01:45 -08:00
Ralf W. Grosse-Kunstleve
3cef809281 Temporarily remove pip.yml, to avoid GHA failures while waiting for a fix on master. 2023-02-07 23:56:34 -08:00
Ralf W. Grosse-Kunstleve
0be972a9c1 Merge branch 'master' into sh_merge_master 2022-12-08 23:19:31 -08:00
dependabot[bot]
65cc9d2a29
chore(deps): bump pypa/gh-action-pypi-publish from 1.6.1 to 1.6.4 (#4389) 
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.6.1 to 1.6.4.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.6.1...v1.6.4)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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 2022-12-06 23:36:11 -05:00
Ralf W. Grosse-Kunstleve
3036510bb7 Merge branch 'master' into sh_merge_master 2022-12-05 14:35:42 -08:00
dependabot[bot]
a6e75e4d8a
chore(deps): bump pypa/gh-action-pypi-publish from 1.5.2 to 1.6.1 (#4384) 
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.5.2 to 1.6.1.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.5.2...v1.6.1)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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 2022-12-05 01:03:05 -08:00
Ralf W. Grosse-Kunstleve
10d4aa7476 Merge branch 'master' into sh_merge_master_3 2022-12-02 05:28:58 -08:00
dependabot[bot]
b14d58b615
chore(deps): bump pypa/gh-action-pypi-publish from 1.5.1 to 1.5.2 (#4370) 
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.5.1 to 1.5.2.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.5.1...v1.5.2)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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 2022-11-30 23:30:36 -08:00
Ralf W. Grosse-Kunstleve
1f6e9a8945 Merge branch 'master' into sh_merge_master 2022-08-07 15:43:25 -07:00
dependabot[bot]
1e3400b674
chore(deps): bump pypa/gh-action-pypi-publish from 1.5.0 to 1.5.1 (#4091) 
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.5.0 to 1.5.1.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.5.0...v1.5.1)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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 2022-07-28 21:37:47 -04:00
Ralf W. Grosse-Kunstleve
27ce64fc43 Merge branch 'master' into sh_merge_master 2022-07-09 21:47:49 -07:00
dependabot[bot]
bc1f9f9ba6
chore(deps): bump actions/setup-python from 3 to 4 (#3999) 
* chore(deps): bump actions/setup-python from 3 to 4

Bumps [actions/setup-python](https://github.com/actions/setup-python) from 3 to 4.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/v3...v4)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

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* Apply suggestions from code review

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Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
 2022-07-04 10:24:55 -04:00
Ralf W. Grosse-Kunstleve
2ee1e6445d Merge branch 'master' into sh_merge_master 2022-05-02 12:41:48 -07:00
dependabot[bot]
03252067db
chore(deps): bump actions/upload-artifact from 2 to 3 (#3899) 
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 2 to 3.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](https://github.com/actions/upload-artifact/compare/v2...v3)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

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 2022-04-24 16:49:41 -04:00
dependabot[bot]
be4a634c67
chore(deps): bump actions/checkout from 2 to 3 (#3896) 
Bumps [actions/checkout](https://github.com/actions/checkout) from 2 to 3.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v2...v3)

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updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
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 2022-04-24 16:49:13 -04:00
dependabot[bot]
2a7cb008ac
chore(deps): bump actions/download-artifact from 2 to 3 (#3897) 
Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 2 to 3.
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](https://github.com/actions/download-artifact/compare/v2...v3)

---
updated-dependencies:
- dependency-name: actions/download-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

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 2022-04-24 14:41:23 -04:00
dependabot[bot]
b58b772b46
chore(deps): bump actions/setup-python from 2 to 3 (#3895) 
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 2 to 3.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/v2...v3)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

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 2022-04-24 14:40:58 -04:00
Ralf W. Grosse-Kunstleve
e1751c04f0 Merge branch 'master' into sh_merge_master_after_clang-format_etc 
First pass manually resolving the many merge conflicts.
 2022-02-14 14:36:08 -08:00
Ralf W. Grosse-Kunstleve
6493f496e3
Python 2 removal part 1: tests (C++ code is intentionally ~untouched) (#3688) 
* `#error BYE_BYE_GOLDEN_SNAKE`

* Removing everything related to 2.7 from ci.yml

* Commenting-out Centos7

* Removing `PYTHON: 27` from .appveyor.yml

* "PY2" removal, mainly from tests. C++ code is not touched.

* Systematic removal of `u` prefix from `u"..."` and `u'...'` literals. Collateral cleanup of a couple minor other things.

* Cleaning up around case-insensitive hits for `[^a-z]py.*2` in tests/.

* Removing obsolete Python 2 mention in compiling.rst

* Proper `#error` for Python 2.

* Using PY_VERSION_HEX to guard `#error "PYTHON 2 IS NO LONGER SUPPORTED.`

* chore: bump pre-commit

* style: run pre-commit for pyupgrade 3+

* tests: use sys.version_info, not PY

* chore: more Python 2 removal

* Uncommenting Centos7 block (PR #3691 showed that it is working again).

* Update pre-commit hooks

* Fix pre-commit hook

* refactor: remove Python 2 from CMake

* refactor: remove Python 2 from setup code

* refactor: simplify, better static typing

* feat: fail with nice messages

* refactor: drop Python 2 C++ code

* docs: cleanup for Python 3

* revert: intree

revert: intree

* docs: minor touchup to py2 statement

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
 2022-02-10 18:28:08 -08:00
Ralf W. Grosse-Kunstleve
ea0c1e77c8 Merge branch 'master' into sh_merge_master 2022-01-11 17:48:37 -08:00
dependabot[bot]
fb9a222daa
chore(deps): bump pypa/gh-action-pypi-publish from 1.4.2 to 1.5.0 (#3606) 
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.4.2 to 1.5.0.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.4.2...v1.5.0)

---
updated-dependencies:
- dependency-name: pypa/gh-action-pypi-publish
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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 2022-01-10 10:29:30 -05:00
Ralf W. Grosse-Kunstleve
4958fd9aa1 Merge branch 'master' into sh_merge_master 2021-10-26 12:10:34 -07:00
Henry Schreiner
e7e2c79f3f
fix: improve support for Python 3.11-dev (#3368) 
* ci: support Python 3.11-dev

Also update 3.10 to final, better PyPy usage

* fix: use PyFrame_GetCode on Python 3.9+

* ci: some bitiness of pypy not supported on win

* chore: update CMake support to 3.22rc1 to quiet warning

* fix: use dev version of py to fix Py 3.11

* tests: print proper Eigen version

* ci: include pypy2, not sure why

* ci: avoid running on Python 3.11 for now

* ci: fix runs

* ci: simpler PyPy usage, drop unmaintained scipy + pypy index

* ci: only binary numpy, wait on pypy 3.8

* refactor: address review
 2021-10-26 14:50:34 -04:00
Ralf W. Grosse-Kunstleve
3f35af7441 Adding smart_holder branch to workflow_dispatch in all places where stable appears. 2021-03-18 11:29:22 -07:00
dependabot[bot]
c236239356
chore(deps): bump pypa/gh-action-pypi-publish from v1.4.1 to v1.4.2 (#2851) 
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from v1.4.1 to v1.4.2.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.4.1...27b31702a0e7fc50959f5ad993c78deac1bdfc29)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2021-02-09 17:00:16 -05:00
Henry Schreiner
01ad89209a ci: publish in two steps 2020-09-30 17:46:55 -04:00
Henry Schreiner
1994691a9c
ci: download artifact issue 2020-09-30 17:05:32 -04:00
Henry Schreiner
82dbc5b78f
ci: releases (#2530) 
* ci: releases

* docs: minor update form @wjakob

* fix: enforce reasonable version of setuptools
 2020-09-30 15:48:08 -04:00