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165 Commits

Author SHA1 Message Date
Ralf W. Grosse-Kunstleve
f8ea68f242 Merge branch 'master' into sh_merge_master 2023-10-26 22:38:47 -07:00
Henry Schreiner
3aece819fd
chore: update hooks and Ruff config (#4904) 
Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
 2023-10-27 01:26:28 -04:00
Ralf W. Grosse-Kunstleve
7953d19a7c Merge branch 'master' into sh_merge_master 2023-10-03 22:45:09 -07:00
pre-commit-ci[bot]
2b2e4ca4a3
chore(deps): update pre-commit hooks (#4868) 
* chore(deps): update pre-commit hooks

updates:
- [github.com/psf/black-pre-commit-mirror: 23.7.0 → 23.9.1](https://github.com/psf/black-pre-commit-mirror/compare/23.7.0...23.9.1)
- [github.com/astral-sh/ruff-pre-commit: v0.0.287 → v0.0.292](https://github.com/astral-sh/ruff-pre-commit/compare/v0.0.287...v0.0.292)
- [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](https://github.com/codespell-project/codespell/compare/v2.2.5...v2.2.6)
- [github.com/shellcheck-py/shellcheck-py: v0.9.0.5 → v0.9.0.6](https://github.com/shellcheck-py/shellcheck-py/compare/v0.9.0.5...v0.9.0.6)
- [github.com/PyCQA/pylint: v3.0.0a7 → v3.0.0](https://github.com/PyCQA/pylint/compare/v3.0.0a7...v3.0.0)

* Update .pre-commit-config.yaml

* style: pre-commit fixes

* Update .pre-commit-config.yaml

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
 2023-10-03 13:13:44 -04:00
Mateusz Sokół
0a756c0bb2
MAINT: Include numpy._core imports (#4857) 
* MAINT: Include numpy._core imports

* style: pre-commit fixes

* Apply review comments

* style: pre-commit fixes

* Add no-inline attribute

* Select submodule name based on numpy version

* style: pre-commit fixes

* Update pre-commit check

* Add error_already_set and simplify if statement

* Update .pre-commit-config.yaml

Co-authored-by: Ralf W. Grosse-Kunstleve <rwgkio@gmail.com>

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Ralf W. Grosse-Kunstleve <rwgkio@gmail.com>
 2023-09-27 10:22:04 -07:00
Ralf W. Grosse-Kunstleve
35b26794ec Merge branch 'master' into sh_merge_master 2023-09-10 10:49:38 -07:00
pre-commit-ci[bot]
467fe27bd9
chore(deps): update pre-commit hooks (#4838) 
* chore(deps): update pre-commit hooks

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.0.281 → v0.0.287](https://github.com/astral-sh/ruff-pre-commit/compare/v0.0.281...v0.0.287)
- [github.com/pre-commit/mirrors-mypy: v1.4.1 → v1.5.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.4.1...v1.5.1)
- [github.com/asottile/blacken-docs: 1.15.0 → 1.16.0](https://github.com/asottile/blacken-docs/compare/1.15.0...1.16.0)
- [github.com/Lucas-C/pre-commit-hooks: v1.5.1 → v1.5.4](https://github.com/Lucas-C/pre-commit-hooks/compare/v1.5.1...v1.5.4)
- [github.com/PyCQA/pylint: v3.0.0a6 → v3.0.0a7](https://github.com/PyCQA/pylint/compare/v3.0.0a6...v3.0.0a7)

* style: pre-commit fixes

* Update pyproject.toml

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
 2023-09-06 06:04:27 -07:00
Henry Schreiner
9039e6ac42
chore: use 2x faster black mirror (#4784) 
Committed via https://github.com/asottile/all-repos
 2023-08-10 15:17:56 -04:00
Ralf W. Grosse-Kunstleve
7b62184cd2 Merge branch 'master' into sh_merge_master 2023-08-03 22:53:08 -07:00
pre-commit-ci[bot]
413e6328dc
chore(deps): update pre-commit hooks (#4770) 
updates:
- [github.com/psf/black: 23.3.0 → 23.7.0](https://github.com/psf/black/compare/23.3.0...23.7.0)
- [github.com/astral-sh/ruff-pre-commit: v0.0.276 → v0.0.281](https://github.com/astral-sh/ruff-pre-commit/compare/v0.0.276...v0.0.281)
- [github.com/asottile/blacken-docs: 1.14.0 → 1.15.0](https://github.com/asottile/blacken-docs/compare/1.14.0...1.15.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2023-08-03 22:11:25 -07:00
Ralf W. Grosse-Kunstleve
9319f4ae75 Merge branch 'master' into sh_merge_master 2023-07-12 13:23:42 -07:00
pre-commit-ci[bot]
47dc0c4bd1
chore(deps): update pre-commit hooks (#4727) 
updates:
- [github.com/pre-commit/mirrors-clang-format: v16.0.4 → v16.0.6](https://github.com/pre-commit/mirrors-clang-format/compare/v16.0.4...v16.0.6)
- https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit
- [github.com/astral-sh/ruff-pre-commit: v0.0.270 → v0.0.276](https://github.com/astral-sh/ruff-pre-commit/compare/v0.0.270...v0.0.276)
- [github.com/pre-commit/mirrors-mypy: v1.3.0 → v1.4.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.3.0...v1.4.1)
- [github.com/asottile/blacken-docs: 1.13.0 → 1.14.0](https://github.com/asottile/blacken-docs/compare/1.13.0...1.14.0)
- [github.com/codespell-project/codespell: v2.2.4 → v2.2.5](https://github.com/codespell-project/codespell/compare/v2.2.4...v2.2.5)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
 2023-07-11 10:31:43 -07:00
Henry Schreiner
5ccb9e412d
chore: ruff moved to astral-sh (#4726) 
* chore: ruff moved to astral-sh

Committed via https://github.com/asottile/all-repos

* ci: bump CUDA version
 2023-07-04 08:38:14 -04:00
Ralf W. Grosse-Kunstleve
3a5d27e1f0 Merge branch 'master' into sh_merge_master 2023-06-27 15:11:06 -07:00
Henry Schreiner
bc1bcf7c05
chore: 3.12 + cleanup (#4713) 
Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
 2023-06-21 13:25:10 -04:00
Ralf W. Grosse-Kunstleve
eb510d5131 Merge branch 'master' into sh_merge_master 2023-06-17 07:13:12 -07:00
Ralf W. Grosse-Kunstleve
86f60a0c07
pre-commit markdown-it-py<3 (for Python 3.7 compatibility) (#4704) 
* markdown-it-py dropped Python 3.7 support, but we are type checking for Python 3.7 from a newer version of Python. Keep using markdown-it-py<3 as long as we support Python 3.7.

* Shuffle order of pre-commit checks for better agility.
 2023-06-16 14:09:40 -07:00
Ralf W. Grosse-Kunstleve
6a567a30fd Merge branch 'master' into sh_merge_master 2023-06-07 13:50:35 -07:00
pre-commit-ci[bot]
3617f3554a
chore(deps): update pre-commit hooks (#4689) 
* chore(deps): update pre-commit hooks

updates:
- [github.com/charliermarsh/ruff-pre-commit: v0.0.263 → v0.0.270](https://github.com/charliermarsh/ruff-pre-commit/compare/v0.0.263...v0.0.270)
- [github.com/pre-commit/mirrors-mypy: v1.2.0 → v1.3.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.2.0...v1.3.0)
- [github.com/shellcheck-py/shellcheck-py: v0.9.0.2 → v0.9.0.5](https://github.com/shellcheck-py/shellcheck-py/compare/v0.9.0.2...v0.9.0.5)
- [github.com/pre-commit/mirrors-clang-format: v16.0.2 → v16.0.4](https://github.com/pre-commit/mirrors-clang-format/compare/v16.0.2...v16.0.4)

* Resolve new ruff error:

```
tests/test_pytypes.py:478:20: PLW0130 Duplicate value `3` in set
```

The reduction from `{3, 3}` to `{3}` never happened in pybind11 code, therefore this change is essentially a no-op for the purpose of unit-testing pybind11.

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
 2023-06-07 12:57:38 -07:00
Ralf W. Grosse-Kunstleve
9651d3bd43 Merge branch 'master' into sh_merge_master 2023-05-04 22:44:29 -07:00
pre-commit-ci[bot]
b3e88ecf89
chore(deps): update pre-commit hooks (#4648) 
updates:
- [github.com/pre-commit/mirrors-mypy: v1.1.1 → v1.2.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.1.1...v1.2.0)
- [github.com/pre-commit/mirrors-clang-format: v16.0.0 → v16.0.2](https://github.com/pre-commit/mirrors-clang-format/compare/v16.0.0...v16.0.2)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2023-05-03 00:35:21 -04:00
Ralf W. Grosse-Kunstleve
4d597f8aa0 Merge branch 'master' into sh_merge_master 2023-04-30 21:23:26 -07:00
pre-commit-ci[bot]
5e946c2fa5
chore(deps): update pre-commit hooks (#4605) 
* chore(deps): update pre-commit hooks

updates:
- [github.com/psf/black: 23.1.0 → 23.3.0](https://github.com/psf/black/compare/23.1.0...23.3.0)
- [github.com/Lucas-C/pre-commit-hooks: v1.4.2 → v1.5.1](https://github.com/Lucas-C/pre-commit-hooks/compare/v1.4.2...v1.5.1)
- [github.com/charliermarsh/ruff-pre-commit: v0.0.254 → v0.0.260](https://github.com/charliermarsh/ruff-pre-commit/compare/v0.0.254...v0.0.260)
- [github.com/PyCQA/pylint: v2.16.4 → v3.0.0a6](https://github.com/PyCQA/pylint/compare/v2.16.4...v3.0.0a6)
- [github.com/pre-commit/mirrors-mypy: v1.0.1 → v1.1.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.0.1...v1.1.1)
- [github.com/codespell-project/codespell: v2.2.2 → v2.2.4](https://github.com/codespell-project/codespell/compare/v2.2.2...v2.2.4)
- [github.com/pre-commit/mirrors-clang-format: v15.0.7 → v16.0.0](https://github.com/pre-commit/mirrors-clang-format/compare/v15.0.7...v16.0.0)

* style: pre-commit fixes

* style: fix issues

* Update tests/test_call_policies.py

* Update tests/test_call_policies.py

* fix: ignore code in file

* style: pre-commit fixes

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
 2023-04-28 14:32:32 -04:00
Ralf W. Grosse-Kunstleve
945be5bbd9 Merge branch 'master' into sh_merge_master 2023-03-16 21:36:21 -07:00
pre-commit-ci[bot]
cbb876cc7b
chore(deps): update pre-commit hooks (#4552) 
updates:
- [github.com/charliermarsh/ruff-pre-commit: v0.0.251 → v0.0.254](https://github.com/charliermarsh/ruff-pre-commit/compare/v0.0.251...v0.0.254)
- [github.com/PyCQA/pylint: v2.16.1 → v2.16.4](https://github.com/PyCQA/pylint/compare/v2.16.1...v2.16.4)
- [github.com/pre-commit/mirrors-mypy: v0.991 → v1.0.1](https://github.com/pre-commit/mirrors-mypy/compare/v0.991...v1.0.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2023-03-07 00:34:41 -05:00
Ralf W. Grosse-Kunstleve
480eb36b3a ubench ruff noqa (in files) 2023-02-22 14:05:23 -08:00
Ralf W. Grosse-Kunstleve
e0029bd3b0 ruff: exclude: ubench for now 2023-02-22 12:42:23 -08:00
Ralf W. Grosse-Kunstleve
9005b55bdf Merge branch 'master' into sh_merge_master 2023-02-22 12:32:31 -08:00
Henry Schreiner
438034c5b8
chore: move to Ruff and add rules (#4483) 2023-02-22 06:18:55 -08:00
Ralf W. Grosse-Kunstleve
8c43d35210 Merge branch 'master' into sh_merge_master3 2023-02-07 23:54:04 -08:00
pre-commit-ci[bot]
8a90b36772
chore(deps): update pre-commit hooks (#4495) 
updates:
- [github.com/PyCQA/pylint: v2.16.0 → v2.16.1](https://github.com/PyCQA/pylint/compare/v2.16.0...v2.16.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2023-02-07 01:16:25 -05:00
Henry Schreiner
3efe9d4cb5
chore: update to black 23 (#4482) 
Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
 2023-02-01 14:23:37 -05:00
Ralf W. Grosse-Kunstleve
c71e3af73f
Bump isort version to 5.12.0 (#4480) 2023-01-31 22:44:18 -08:00
Ralf W. Grosse-Kunstleve
44d158ca50 Merge branch 'master' into sh_merge_master 2023-01-03 19:40:01 -08:00
pre-commit-ci[bot]
769fd3b889
chore(deps): update pre-commit hooks (#4439) 
updates:
- [github.com/asottile/pyupgrade: v3.3.0 → v3.3.1](https://github.com/asottile/pyupgrade/compare/v3.3.0...v3.3.1)
- [github.com/PyCQA/isort: 5.10.1 → 5.11.4](https://github.com/PyCQA/isort/compare/5.10.1...5.11.4)
- [github.com/psf/black: 22.10.0 → 22.12.0](https://github.com/psf/black/compare/22.10.0...22.12.0)
- [github.com/PyCQA/pylint: v2.15.8 → v2.15.9](https://github.com/PyCQA/pylint/compare/v2.15.8...v2.15.9)
- [github.com/shellcheck-py/shellcheck-py: v0.8.0.4 → v0.9.0.2](https://github.com/shellcheck-py/shellcheck-py/compare/v0.8.0.4...v0.9.0.2)
- [github.com/pre-commit/mirrors-clang-format: v15.0.4 → v15.0.6](https://github.com/pre-commit/mirrors-clang-format/compare/v15.0.4...v15.0.6)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2023-01-03 10:21:05 -05:00
Ralf W. Grosse-Kunstleve
0be972a9c1 Merge branch 'master' into sh_merge_master 2022-12-08 23:19:31 -08:00
pre-commit-ci[bot]
4768a6f8f5
chore(deps): update pre-commit hooks (#4386) 
* chore(deps): update pre-commit hooks

updates:
- [github.com/pre-commit/pre-commit-hooks: v4.3.0 → v4.4.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.3.0...v4.4.0)
- [github.com/asottile/pyupgrade: v3.2.0 → v3.3.0](https://github.com/asottile/pyupgrade/compare/v3.2.0...v3.3.0)
- [github.com/hadialqattan/pycln: v2.1.1 → v2.1.2](https://github.com/hadialqattan/pycln/compare/v2.1.1...v2.1.2)
- [github.com/PyCQA/flake8: 5.0.4 → 6.0.0](https://github.com/PyCQA/flake8/compare/5.0.4...6.0.0)
- [github.com/PyCQA/pylint: v2.15.5 → v2.15.8](https://github.com/PyCQA/pylint/compare/v2.15.5...v2.15.8)
- [github.com/pre-commit/mirrors-mypy: v0.982 → v0.991](https://github.com/pre-commit/mirrors-mypy/compare/v0.982...v0.991)
- [github.com/mgedmin/check-manifest: 0.48 → 0.49](https://github.com/mgedmin/check-manifest/compare/0.48...0.49)
- [github.com/pre-commit/mirrors-clang-format: v14.0.6 → v15.0.4](https://github.com/pre-commit/mirrors-clang-format/compare/v14.0.6...v15.0.4)

* style: pre-commit fixes

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-12-06 10:10:48 -08:00
Aaron Gokaslan
5b092eddde chore: sync blacken-docs hook with black (#4304) 2022-11-18 10:08:11 -08:00
pre-commit-ci[bot]
9bd8f656d3 chore(deps): update pre-commit hooks (#4302) 
updates:
- [github.com/asottile/pyupgrade: v2.38.2 → v3.2.0](https://github.com/asottile/pyupgrade/compare/v2.38.2...v3.2.0)
- [github.com/psf/black: 22.8.0 → 22.10.0](https://github.com/psf/black/compare/22.8.0...22.10.0)
- [github.com/PyCQA/pylint: v2.15.3 → v2.15.5](https://github.com/PyCQA/pylint/compare/v2.15.3...v2.15.5)
- [github.com/pre-commit/mirrors-mypy: v0.981 → v0.982](https://github.com/pre-commit/mirrors-mypy/compare/v0.981...v0.982)
- [github.com/codespell-project/codespell: v2.2.1 → v2.2.2](https://github.com/codespell-project/codespell/compare/v2.2.1...v2.2.2)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-11-18 10:08:11 -08:00
Aaron Gokaslan
0176632e8c
chore: sync blacken-docs hook with black (#4304) 2022-11-01 12:19:34 -04:00
pre-commit-ci[bot]
2441d25b26
chore(deps): update pre-commit hooks (#4302) 
updates:
- [github.com/asottile/pyupgrade: v2.38.2 → v3.2.0](https://github.com/asottile/pyupgrade/compare/v2.38.2...v3.2.0)
- [github.com/psf/black: 22.8.0 → 22.10.0](https://github.com/psf/black/compare/22.8.0...22.10.0)
- [github.com/PyCQA/pylint: v2.15.3 → v2.15.5](https://github.com/PyCQA/pylint/compare/v2.15.3...v2.15.5)
- [github.com/pre-commit/mirrors-mypy: v0.981 → v0.982](https://github.com/pre-commit/mirrors-mypy/compare/v0.981...v0.982)
- [github.com/codespell-project/codespell: v2.2.1 → v2.2.2](https://github.com/codespell-project/codespell/compare/v2.2.1...v2.2.2)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-11-01 00:10:13 -04:00
Ralf W. Grosse-Kunstleve
67561bc6d2 Merge branch 'master' into smart_holder 2022-10-09 21:55:40 -07:00
Henry Schreiner
8275b76912
ci: update pre-commit schedule (#4212) 2022-10-04 14:01:26 -04:00
pre-commit-ci[bot]
600d697648
[pre-commit.ci] pre-commit autoupdate (#4210) 
updates:
- [github.com/pre-commit/mirrors-mypy: v0.971 → v0.981](https://github.com/pre-commit/mirrors-mypy/compare/v0.971...v0.981)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-10-03 21:25:46 -04:00
pre-commit-ci[bot]
da8c730a62
[pre-commit.ci] pre-commit autoupdate (#4197) 
updates:
- [github.com/asottile/pyupgrade: v2.38.0 → v2.38.2](https://github.com/asottile/pyupgrade/compare/v2.38.0...v2.38.2)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-09-26 20:44:19 -04:00
pre-commit-ci[bot]
d02f219fb9
[pre-commit.ci] pre-commit autoupdate (#4189) 
updates:
- [github.com/asottile/pyupgrade: v2.37.3 → v2.38.0](https://github.com/asottile/pyupgrade/compare/v2.37.3...v2.38.0)
- [github.com/PyCQA/pylint: v2.15.2 → v2.15.3](https://github.com/PyCQA/pylint/compare/v2.15.2...v2.15.3)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-09-19 21:11:57 -04:00
Ralf W. Grosse-Kunstleve
e5a5a83c61 Merge branch 'master' into sh_merge_master 2022-09-15 05:35:19 -07:00
pre-commit-ci[bot]
64f7281874
[pre-commit.ci] pre-commit autoupdate (#4178) 
updates:
- [github.com/PyCQA/pylint: v2.15.0 → v2.15.2](https://github.com/PyCQA/pylint/compare/v2.15.0...v2.15.2)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-09-12 20:04:44 -04:00
pre-commit-ci[bot]
aa8f8baa4e
[pre-commit.ci] pre-commit autoupdate (#4171) 
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/psf/black: 22.6.0 → 22.8.0](https://github.com/psf/black/compare/22.6.0...22.8.0)

* Update .pre-commit-config.yaml

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
 2022-09-07 09:19:02 -04:00
pre-commit-ci[bot]
8756f16ed8
[pre-commit.ci] pre-commit autoupdate (#4151) 
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/Lucas-C/pre-commit-hooks: v1.3.0 → v1.3.1](https://github.com/Lucas-C/pre-commit-hooks/compare/v1.3.0...v1.3.1)
- [github.com/sirosen/texthooks: 0.3.1 → 0.4.0](https://github.com/sirosen/texthooks/compare/0.3.1...0.4.0)
- [github.com/PyCQA/pylint: v2.14.5 → v2.15.0](https://github.com/PyCQA/pylint/compare/v2.14.5...v2.15.0)
- [github.com/codespell-project/codespell: v2.1.0 → v2.2.1](https://github.com/codespell-project/codespell/compare/v2.1.0...v2.2.1)

* Introduce .codespell-ignore-lines for safer (line-based instead of word-based) suppressions.

* Fix two issues: 1. ensure sort order; 2. remove duplicates

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
 2022-08-29 21:59:48 -07:00