Commit Graph

3127 Commits

Author SHA1 Message Date
Henry Schreiner
6831666f5c
ci: add more versions of numpy/scipy/pypy (#4714)
* ci: add more versions of numpy/scipy/pypy

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

* Apply suggestions from code review

* style: pre-commit fixes

* Update requirements.txt

* Update requirements.txt

* Apply suggestions from code review

---------

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2023-11-16 00:52:05 -05:00
Henry Schreiner
6cf90e7286
fix(cmake): avoid really slow compile on emscripten (#4642)
* fix: avoid really slow compile on emscripten

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

* Update tools/pybind11Common.cmake

---------

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
2023-11-16 00:50:15 -05:00
Steve R. Sun
03e40693f6
Merge branch 'pybind:master' into master 2023-11-16 11:50:38 +08:00
Henry Schreiner
b389ae77cb
chore: update changelog script for categories (#4942) 2023-11-15 18:59:07 -05:00
Steve R. Sun
6b3ac19ffe
Merge branch 'pybind:master' into master 2023-11-09 10:32:13 +08:00
Ralf W. Grosse-Kunstleve
e250155afa
Fix a long-standing bug in the handling of Python multiple inheritance (#4762)
* Equivalent of 5718e4d080

* Resolve clang-tidy errors.

* Moving test_PPCCInit() first changes the behavior!

* Resolve new Clang dev C++11 errors:

```
The CXX compiler identification is Clang 17.0.0
```

```
pytypes.h:1615:23: error: identifier '_s' preceded by whitespace in a literal operator declaration is deprecated [-Werror,-Wdeprecated-literal-operator]
```

```
cast.h:1380:26: error: identifier '_a' preceded by whitespace in a literal operator declaration is deprecated [-Werror,-Wdeprecated-literal-operator]
```

* Resolve gcc 4.8.5 error:

```
pytypes.h:1615:12: error: missing space between '""' and suffix identifier
```

* Specifically exclude `__clang__`

* Snapshot of debugging code (does NOT pass pre-commit checks).

* Revert "Snapshot of debugging code (does NOT pass pre-commit checks)."

This reverts commit 1d4f9ff263.

* [ci skip] Order Dependence Demo

* Revert "[ci skip] Order Dependence Demo"

This reverts commit d37b5409d4.

* One way to deal with the order dependency issue. This is not the best way, more like a proof of concept.

* Move test_PC() first again.

* Add `all_type_info_add_base_most_derived_first()`, use in `all_type_info_populate()`

* Revert "One way to deal with the order dependency issue. This is not the best way, more like a proof of concept."

This reverts commit eb09c6c1b9.

* clang-tidy fixes (automatic)

* Add `is_redundant_value_and_holder()` and use to avoid forcing `__init__` overrides when they are not needed.

* Streamline implementation and avoid unsafe `reinterpret_cast<instance *>()` introduced with PR #2152

The `reinterpret_cast<instance *>(self)` is unsafe if `__new__` is mocked,
which was actually found in the wild: the mock returned `None` for `self`.
This was inconsequential because `inst` is currently cast straight back to
`PyObject *` to compute `all_type_info()`, which is empty if `self` is not
a pybind11 `instance`, and then `inst` is never dereferenced. However, the
unsafe detour through `instance *` is easily avoided and the updated
implementation is less prone to accidents while debugging or refactoring.

* Fix actual undefined behavior exposed by previous changes.

It turns out the previous commit message is incorrect, the `inst` pointer is actually dereferenced, in the `value_and_holder` ctor here:

f3e0602802/include/pybind11/detail/type_caster_base.h (L262-L263)

```
259     // Main constructor for a found value/holder:
260     value_and_holder(instance *i, const detail::type_info *type, size_t vpos, size_t index)
261         : inst{i}, index{index}, type{type},
262           vh{inst->simple_layout ? inst->simple_value_holder
263                                  : &inst->nonsimple.values_and_holders[vpos]} {}
```

* Add test_mock_new()

* Experiment: specify indirect bases

* Revert "Experiment: specify indirect bases"

This reverts commit 4f90d85f9f.

* Add `all_type_info_check_for_divergence()` and some tests.

* Call `all_type_info_check_for_divergence()` also from `type_caster_generic::load_impl<>`

* Resolve clang-tidy error:

```
include/pybind11/detail/type_caster_base.h:795:21: error: the 'empty' method should be used to check for emptiness instead of 'size' [readability-container-size-empty,-warnings-as-errors]
                if (matching_bases.size() != 0) {
                    ^~~~~~~~~~~~~~~~~~~~~~~~~~
                    !matching_bases.empty()
```

* Revert "Resolve clang-tidy error:"

This reverts commit df27188dc6.

* Revert "Call `all_type_info_check_for_divergence()` also from `type_caster_generic::load_impl<>`"

This reverts commit 5f5fd6a68e.

* Revert "Add `all_type_info_check_for_divergence()` and some tests."

This reverts commit 0a9599f775.
2023-11-08 12:44:04 -08:00
Ralf W. Grosse-Kunstleve
2c35fde389
Fix refcount bug introduced with PR #4916. (#4927)
https://github.com/pybind/pybind11/pull/4916/files#r1387035547
2023-11-08 11:16:10 -08:00
Henry Schreiner
c758b81f3b
chore: move to ruff-format (#4912)
Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
2023-11-07 23:42:54 -08:00
pre-commit-ci[bot]
0a974fed54
chore(deps): update pre-commit hooks (#4923)
updates:
- [github.com/pre-commit/mirrors-clang-format: v17.0.3 → v17.0.4](https://github.com/pre-commit/mirrors-clang-format/compare/v17.0.3...v17.0.4)
- [github.com/astral-sh/ruff-pre-commit: v0.1.2 → v0.1.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.2...v0.1.4)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2023-11-07 22:59:52 -08:00
Steve R. Sun
8d5e5f3d65
Merge branch 'pybind:master' into master 2023-11-06 09:36:15 +08:00
cyyever
f2606930bf
Use newer PyCode API and other fixes (#4916)
* Use PyCode API

* style: pre-commit fixes

* Free locals

* Fix PY_VERSION_HEX check

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2023-11-05 14:08:32 -08:00
Social_Mean
31b0a5d94f fix doc typo 2023-11-03 23:51:16 -04:00
Steve R. Sun
27e0e0d066
Merge branch 'pybind:master' into master 2023-11-01 11:15:34 +08:00
Axel Huebl
76b7f53649
Python_ADDITIONAL_VERSIONS: 3.12 (#4909)
Add 3.12 to the default `Python_ADDITIONAL_VERSIONS`.
2023-10-31 22:56:16 -04:00
Steve R. Sun
b6a26611e1
Merge branch 'pybind:master' into master 2023-10-28 09:13:48 +08:00
Henry Schreiner
a18c10f690
fix(cmake): make library component optional (#4805)
Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
2023-10-27 11:02:05 -04:00
Henry Schreiner
3aece819fd
chore: update hooks and Ruff config (#4904)
Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
2023-10-27 01:26:28 -04:00
Chun Yang
1e28599e41
fix: Add missing spaces to error string (#4906)
* [minor] Add a missing space

Add a missing space to error message

* Add space after period, always add newline.
2023-10-26 20:40:19 -07:00
Steve R. Sun
e8ab9f1ba0
Merge branch 'pybind:master' into master 2023-10-25 11:02:07 +08:00
Mattias Ellert
fa27d2fd43
Adapt to changed function name in Python 3.13 (#4902)
According to https://docs.python.org/3.13/whatsnew/3.13.html:

Add PyThreadState_GetUnchecked() function: similar to
PyThreadState_Get(), but don't kill the process with a fatal error if
it is NULL. The caller is responsible to check if the result is
NULL. Previously, the function was private and known as
_PyThreadState_UncheckedGet().
2023-10-24 09:46:26 -07:00
Steve R. Sun
a572fe7389
Merge branch 'pybind:master' into master 2023-10-24 10:09:57 +08:00
Ralf W. Grosse-Kunstleve
bf88e29c95
Bug fix: Replace bare static exception<T> with gil_safe_call_once_and_store. (#4897)
This is to ensure that `Py_DECREF()` is not called after the Python interpreter was finalized already:

3414c56b6c/include/pybind11/gil_safe_call_once.h (L19)
2023-10-23 12:51:04 -07:00
Steve R. Sun
6b7cc9e5d1
Merge branch 'pybind:master' into master 2023-10-23 09:22:19 +08:00
Alexander Grund
3414c56b6c
Workaround NVCC parse failure in cast_op (#4893)
* Workaround NVCC parse failure in `cast_op`

There is a bug in some CUDA versions (observed in CUDA 12.1 and 11.7 w/ GCC 12.2),
that makes `cast_op` fail to compile:
  `cast.h:45:120: error: expected template-name before ‘<’ token`

Defining the nested type as an alias and using it allows this to work
without any change in semantics.

Fixes #4606

* style: pre-commit fixes

* Add comments to result_t referencing PR

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2023-10-21 10:50:14 -07:00
Ralf W. Grosse-Kunstleve
7969049de4
Comment out failing job, with link to #4889 (#4890) 2023-10-19 23:12:37 -07:00
Steve R. Sun
0bcfee3f74
Merge branch 'pybind:master' into master 2023-10-18 09:08:49 +08:00
Sergei Izmailov
74439a64a2
feature: Use typed iterators in make_*iterator (#4876) 2023-10-17 12:04:46 -07:00
Steve R. Sun
873685ef9c
Merge branch 'pybind:master' into master 2023-10-17 10:07:33 +08:00
Pablo Speciale
0cbd92bab8
Update pytest to version 7.2.0 (which removes their dependency on py) (#4880)
* Update pytest (which removes their dependency on py)

The py library through 1.11.0 for Python allows remote attackers to conduct a ReDoS (Regular expression Denial of Service) attack via a Subversion repository with crafted info data, because the InfoSvnCommand argument is mishandled.

The particular codepath in question is the regular expression at py._path.svnurl.InfoSvnCommand.lspattern and is only relevant when dealing with subversion (svn) projects. Notably the codepath is not used in the popular pytest project. The developers of the pytest package have released version 7.2.0 which removes their dependency on py. Users of pytest seeing alerts relating to this advisory may update to version 7.2.0 of pytest to resolve this issue. See https://github.com/pytest-dev/py/issues/287#issuecomment-1290407715 for additional context.

* Added conditions so that we keep using 7.0.0 on python 3.6
2023-10-16 07:42:30 -07:00
Steve R. Sun
4ab72ba534
Merge branch 'pybind:master' into master 2023-10-14 17:25:09 +08:00
Ralf W. Grosse-Kunstleve
0e2c3e5db4
Add pybind11/gil_safe_call_once.h (to fix deadlocks in pybind11/numpy.h) (#4877)
* LazyInitializeAtLeastOnceDestroyNever v1

* Go back to using `union` as originally suggested by jbms@. The trick (also suggested by jbms@) is to add empty ctor + dtor.

* Revert "Go back to using `union` as originally suggested by jbms@. The trick (also suggested by jbms@) is to add empty ctor + dtor."

This reverts commit e7b8c4f0fc.

* Remove `#include <stdalign.h>`

* `include\pybind11/numpy.h(24,10): fatal error C1083: Cannot open include file: 'stdalign.h': No such file or directory`

* @tkoeppe wrote: this is a C interop header (and we're not writing C)

* Suppress gcc 4.8.5 (CentOS 7) warning.

```
include/pybind11/eigen/../numpy.h:63:53: error: dereferencing type-punned pointer will break strict-aliasing rules [-Werror=strict-aliasing]
         return *reinterpret_cast<T *>(value_storage_);
                                                     ^
```

* Replace comments:

Document PRECONDITION.

Adopt comment suggested by @tkoeppe: https://github.com/pybind/pybind11/pull/4877#discussion_r1350356093

* Adopt suggestion by @tkoeppe:

* https://github.com/pybind/pybind11/pull/4877#issuecomment-1752969127

* https://godbolt.org/z/Wa79nKz6e

* Add `PYBIND11_CONSTINIT`, but it does not work for the current use cases:

```
g++ -o pybind11/tests/test_numpy_array.os -c -std=c++20 -fPIC -fvisibility=hidden -O0 -g -Wall -Wextra -Wconversion -Wcast-qual -Wdeprecated -Wundef -Wnon-virtual-dtor -Wunused-result -Werror -isystem /usr/include/python3.11 -isystem /usr/include/eigen3 -DPYBIND11_STRICT_ASSERTS_CLASS_HOLDER_VS_TYPE_CASTER_MIX -DPYBIND11_ENABLE_TYPE_CASTER_ODR_GUARD_IF_AVAILABLE -DPYBIND11_TEST_BOOST -Ipybind11/include -I/usr/local/google/home/rwgk/forked/pybind11/include -I/usr/local/google/home/rwgk/clone/pybind11/include /usr/local/google/home/rwgk/forked/pybind11/tests/test_numpy_array.cpp
```

```
In file included from /usr/local/google/home/rwgk/forked/pybind11/tests/test_numpy_array.cpp:10:
/usr/local/google/home/rwgk/forked/pybind11/include/pybind11/numpy.h: In static member function ‘static pybind11::detail::npy_api& pybind11::detail::npy_api::get()’:
/usr/local/google/home/rwgk/forked/pybind11/include/pybind11/numpy.h:258:82: error: ‘constinit’ variable ‘api_init’ does not have a constant initializer
  258 |         PYBIND11_CONSTINIT static LazyInitializeAtLeastOnceDestroyNever<npy_api> api_init;
      |                                                                                  ^~~~~~~~
```

```
In file included from /usr/local/google/home/rwgk/forked/pybind11/tests/test_numpy_array.cpp:10:
/usr/local/google/home/rwgk/forked/pybind11/include/pybind11/numpy.h: In static member function ‘static pybind11::object& pybind11::dtype::_dtype_from_pep3118()’:
/usr/local/google/home/rwgk/forked/pybind11/include/pybind11/numpy.h:697:13: error: ‘constinit’ variable ‘imported_obj’ does not have a constant initializer
  697 |             imported_obj;
      |             ^~~~~~~~~~~~
```

* Revert "Add `PYBIND11_CONSTINIT`, but it does not work for the current use cases:"

This reverts commit f07b28bda9.

* Reapply "Add `PYBIND11_CONSTINIT`, but it does not work for the current use cases:"

This reverts commit 36be645758.

* Add Default Member Initializer on `value_storage_` as suggested by @tkoeppe:

https://github.com/pybind/pybind11/pull/4877#issuecomment-1753201342

This fixes the errors reported under commit f07b28bda9.

* Fix copy-paste-missed-a-change mishap in commit 88cec1152a.

* Semi-paranoid placement new (based on https://github.com/pybind/pybind11/pull/4877#discussion_r1350573114).

* Move PYBIND11_CONSTINIT to detail/common.h

* Move code to the right places, rename new class and some variables.

* Fix oversight: update tests/extra_python_package/test_files.py

* Get the name right first.

* Use `std::call_once`, `std::atomic`, following a pattern developed by @tkoeppe

* Make the API more self-documenting (and possibly more easily reusable).

* google-clang-tidy IWYU fixes

* Rewrite comment as suggested by @tkoeppe

* Update test_exceptions.cpp and exceptions.rst

* Fix oversight in previous commit: add `PYBIND11_CONSTINIT`

* Make `get_stored()` non-const for simplicity.

As suggested by @tkoeppe: not seeing any reasonable use in which `get_stored` has to be const.

* Add comment regarding `KeyboardInterrupt` behavior, based heavily on information provided by @jbms.

* Add `assert(PyGILState_Check())` in `gil_scoped_release` ctor (simple & non-simple implementation) as suggested by @EthanSteinberg.

* Fix oversight in previous commit (missing include cassert).

* Remove use of std::atomic, leaving comments with rationale, why it is not needed.

* Rewrite comment re `std:optional` based on deeper reflection (aka 2nd thoughts).

* Additional comment with the conclusion of a discussion under PR #4877.

* https://github.com/pybind/pybind11/pull/4877#issuecomment-1757363179

* Small comment changes suggested by @tkoeppe.
2023-10-11 21:05:31 -07:00
Steve R. Sun
2eb545ffd3
Merge branch 'pybind:master' into master 2023-10-07 11:49:44 +08:00
dependabot[bot]
6c77208561
chore(deps): bump seanmiddleditch/gha-setup-ninja from 3 to 4 (#4875)
Bumps [seanmiddleditch/gha-setup-ninja](https://github.com/seanmiddleditch/gha-setup-ninja) from 3 to 4.
- [Release notes](https://github.com/seanmiddleditch/gha-setup-ninja/releases)
- [Commits](https://github.com/seanmiddleditch/gha-setup-ninja/compare/v3...v4)

---
updated-dependencies:
- dependency-name: seanmiddleditch/gha-setup-ninja
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-10-05 21:21:22 -07:00
Steve R. Sun
140463af93
Merge branch 'pybind:master' into master 2023-10-05 16:05:32 +08:00
pre-commit-ci[bot]
2b2e4ca4a3
chore(deps): update pre-commit hooks (#4868)
* chore(deps): update pre-commit hooks

updates:
- [github.com/psf/black-pre-commit-mirror: 23.7.0 → 23.9.1](https://github.com/psf/black-pre-commit-mirror/compare/23.7.0...23.9.1)
- [github.com/astral-sh/ruff-pre-commit: v0.0.287 → v0.0.292](https://github.com/astral-sh/ruff-pre-commit/compare/v0.0.287...v0.0.292)
- [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](https://github.com/codespell-project/codespell/compare/v2.2.5...v2.2.6)
- [github.com/shellcheck-py/shellcheck-py: v0.9.0.5 → v0.9.0.6](https://github.com/shellcheck-py/shellcheck-py/compare/v0.9.0.5...v0.9.0.6)
- [github.com/PyCQA/pylint: v3.0.0a7 → v3.0.0](https://github.com/PyCQA/pylint/compare/v3.0.0a7...v3.0.0)

* Update .pre-commit-config.yaml

* style: pre-commit fixes

* Update .pre-commit-config.yaml

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
2023-10-03 13:13:44 -04:00
Mateusz Sokół
dd64df73c3
MAINT: Remove np.int_ (#4867) 2023-10-03 09:12:58 -07:00
Steve R. Sun
eebdc434af
Merge branch 'pybind:master' into master 2023-09-28 11:14:28 +08:00
Mateusz Sokół
0a756c0bb2
MAINT: Include numpy._core imports (#4857)
* MAINT: Include numpy._core imports

* style: pre-commit fixes

* Apply review comments

* style: pre-commit fixes

* Add no-inline attribute

* Select submodule name based on numpy version

* style: pre-commit fixes

* Update pre-commit check

* Add error_already_set and simplify if statement

* Update .pre-commit-config.yaml

Co-authored-by: Ralf W. Grosse-Kunstleve <rwgkio@gmail.com>

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Ralf W. Grosse-Kunstleve <rwgkio@gmail.com>
2023-09-27 10:22:04 -07:00
Ralf W. Grosse-Kunstleve
f468b0707e
Add 2 missing throw error_already_set(); (#4863)
Fixes oversights in PR #4570.
2023-09-27 09:55:49 -07:00
Steve R. Sun
df86c5dfc6
Merge branch 'pybind:master' into master 2023-09-26 11:24:28 +08:00
Oleksandr Pavlyk
7e5edbc947
Avoid copy in iteration by using const auto & (#4861)
This change is fixing a Coverity AUTO_CAUSES_COPY issues.
2023-09-25 08:38:21 -07:00
Steve R. Sun
46697711b3
Merge branch 'pybind:master' into master 2023-09-18 11:54:11 +08:00
László Papp
5891867ee4
fix(cmake): support DEBUG_POSTFIX correctly (#4761)
* cmake: split extension

Into suffix and debug postfix. Pybind11 is currently treating both as
suffix, which is problematic when something else defines the
DEBUG_POSTFIX because they will be concatenated.

pybind11_extension sets SUFFIX to _d.something and if DEBUG_POSTFIX is
set to _d.

    _d + _d.something = _d_d.something

The issue has been reported at:

https://github.com/pybind/pybind11/issues/4699

* style: pre-commit fixes

* fix(cmake): support postfix for old FindPythonInterp mode too

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

---------

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2023-09-15 18:05:43 -04:00
Henry Schreiner
4fb111bd78
fix(cmake): correctly detect FindPython policy and better warning (#4806) 2023-09-15 17:59:30 -04:00
Steve R. Sun
41e182b553
Merge branch 'pybind:master' into master 2023-09-15 10:39:52 +08:00
Ralf W. Grosse-Kunstleve
d06d53694a
Fix small bug introduced with PR #4735 (#4845)
* Bug fix: `result[0]` called if `result.empty()`

* Add unit test that fails without the fix.
2023-09-14 09:47:34 -07:00
Steve R. Sun
ae96fd6526
Merge branch 'pybind:master' into master 2023-09-13 08:17:51 +08:00
Sergei Izmailov
8c7b8dd0ae
fix: Missing typed variants of iterator and iterable (#4832) 2023-09-12 12:48:27 -07:00
Sergei Izmailov
b4573674bc
Update render for buffer sequence and handle (#4831)
* fix: Add capitalize render name of `py::buffer` and `py::sequence`

* fix: Render `py::handle` same way as `py::object`

* tests: Fix tests `handle` -> `object`

* tests: Test capitaliation of `py::sequence` and `py::buffer`

* style: pre-commit fixes

* fix: Render `py::object` as `Any`

* Revert "fix: Render `py::object` as `Any`"

This reverts commit 7861dcfabb.

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
2023-09-12 12:47:39 -07:00
Sergei Izmailov
c9149d995c
fix: Use lowercase builtin collection names (#4833) 2023-09-12 12:46:58 -07:00