Commit Graph

3385 Commits

Author SHA1 Message Date
Henry Schreiner
a18c10f690
fix(cmake): make library component optional (#4805)
Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
2023-10-27 11:02:05 -04:00
Ralf W. Grosse-Kunstleve
e955753c1b Fix pre-commit mypy error:
```
mypy.....................................................................Failed
- hook id: mypy
- exit code: 1

ubench/holder_comparison.py:12: error: Unused "type: ignore" comment, use narrower [import-not-found] instead of [import] code  [unused-ignore]
```
2023-10-26 22:48:43 -07:00
Ralf W. Grosse-Kunstleve
f8ea68f242 Merge branch 'master' into sh_merge_master 2023-10-26 22:38:47 -07:00
Henry Schreiner
3aece819fd
chore: update hooks and Ruff config (#4904)
Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
2023-10-27 01:26:28 -04:00
Chun Yang
1e28599e41
fix: Add missing spaces to error string (#4906)
* [minor] Add a missing space

Add a missing space to error message

* Add space after period, always add newline.
2023-10-26 20:40:19 -07:00
Mattias Ellert
fa27d2fd43
Adapt to changed function name in Python 3.13 (#4902)
According to https://docs.python.org/3.13/whatsnew/3.13.html:

Add PyThreadState_GetUnchecked() function: similar to
PyThreadState_Get(), but don't kill the process with a fatal error if
it is NULL. The caller is responsible to check if the result is
NULL. Previously, the function was private and known as
_PyThreadState_UncheckedGet().
2023-10-24 09:46:26 -07:00
Ralf W. Grosse-Kunstleve
28ec485553 Merge branch 'master' into sh_merge_master 2023-10-23 16:26:40 -07:00
Ralf W. Grosse-Kunstleve
bf88e29c95
Bug fix: Replace bare static exception<T> with gil_safe_call_once_and_store. (#4897)
This is to ensure that `Py_DECREF()` is not called after the Python interpreter was finalized already:

3414c56b6c/include/pybind11/gil_safe_call_once.h (L19)
2023-10-23 12:51:04 -07:00
Alexander Grund
3414c56b6c
Workaround NVCC parse failure in cast_op (#4893)
* Workaround NVCC parse failure in `cast_op`

There is a bug in some CUDA versions (observed in CUDA 12.1 and 11.7 w/ GCC 12.2),
that makes `cast_op` fail to compile:
  `cast.h:45:120: error: expected template-name before ‘<’ token`

Defining the nested type as an alias and using it allows this to work
without any change in semantics.

Fixes #4606

* style: pre-commit fixes

* Add comments to result_t referencing PR

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2023-10-21 10:50:14 -07:00
Ralf W. Grosse-Kunstleve
4c5b88a557 Tracking ci.yml changes from master. 2023-10-20 00:00:54 -07:00
Ralf W. Grosse-Kunstleve
b272af80a5 Merge branch 'master' into sh_merge_master 2023-10-20 00:00:26 -07:00
Ralf W. Grosse-Kunstleve
7969049de4
Comment out failing job, with link to #4889 (#4890) 2023-10-19 23:12:37 -07:00
Ralf W. Grosse-Kunstleve
ae02940be9 Merge branch 'master' into sh_merge_master 2023-10-17 12:08:51 -07:00
Sergei Izmailov
74439a64a2
feature: Use typed iterators in make_*iterator (#4876) 2023-10-17 12:04:46 -07:00
Pablo Speciale
0cbd92bab8
Update pytest to version 7.2.0 (which removes their dependency on py) (#4880)
* Update pytest (which removes their dependency on py)

The py library through 1.11.0 for Python allows remote attackers to conduct a ReDoS (Regular expression Denial of Service) attack via a Subversion repository with crafted info data, because the InfoSvnCommand argument is mishandled.

The particular codepath in question is the regular expression at py._path.svnurl.InfoSvnCommand.lspattern and is only relevant when dealing with subversion (svn) projects. Notably the codepath is not used in the popular pytest project. The developers of the pytest package have released version 7.2.0 which removes their dependency on py. Users of pytest seeing alerts relating to this advisory may update to version 7.2.0 of pytest to resolve this issue. See https://github.com/pytest-dev/py/issues/287#issuecomment-1290407715 for additional context.

* Added conditions so that we keep using 7.0.0 on python 3.6
2023-10-16 07:42:30 -07:00
Ralf W. Grosse-Kunstleve
901586943f Tracking ci.yml changes from master. 2023-10-11 21:10:22 -07:00
Ralf W. Grosse-Kunstleve
2c88356284 Merge branch 'master' into sh_merge_master 2023-10-11 21:07:36 -07:00
Ralf W. Grosse-Kunstleve
0e2c3e5db4
Add pybind11/gil_safe_call_once.h (to fix deadlocks in pybind11/numpy.h) (#4877)
* LazyInitializeAtLeastOnceDestroyNever v1

* Go back to using `union` as originally suggested by jbms@. The trick (also suggested by jbms@) is to add empty ctor + dtor.

* Revert "Go back to using `union` as originally suggested by jbms@. The trick (also suggested by jbms@) is to add empty ctor + dtor."

This reverts commit e7b8c4f0fc.

* Remove `#include <stdalign.h>`

* `include\pybind11/numpy.h(24,10): fatal error C1083: Cannot open include file: 'stdalign.h': No such file or directory`

* @tkoeppe wrote: this is a C interop header (and we're not writing C)

* Suppress gcc 4.8.5 (CentOS 7) warning.

```
include/pybind11/eigen/../numpy.h:63:53: error: dereferencing type-punned pointer will break strict-aliasing rules [-Werror=strict-aliasing]
         return *reinterpret_cast<T *>(value_storage_);
                                                     ^
```

* Replace comments:

Document PRECONDITION.

Adopt comment suggested by @tkoeppe: https://github.com/pybind/pybind11/pull/4877#discussion_r1350356093

* Adopt suggestion by @tkoeppe:

* https://github.com/pybind/pybind11/pull/4877#issuecomment-1752969127

* https://godbolt.org/z/Wa79nKz6e

* Add `PYBIND11_CONSTINIT`, but it does not work for the current use cases:

```
g++ -o pybind11/tests/test_numpy_array.os -c -std=c++20 -fPIC -fvisibility=hidden -O0 -g -Wall -Wextra -Wconversion -Wcast-qual -Wdeprecated -Wundef -Wnon-virtual-dtor -Wunused-result -Werror -isystem /usr/include/python3.11 -isystem /usr/include/eigen3 -DPYBIND11_STRICT_ASSERTS_CLASS_HOLDER_VS_TYPE_CASTER_MIX -DPYBIND11_ENABLE_TYPE_CASTER_ODR_GUARD_IF_AVAILABLE -DPYBIND11_TEST_BOOST -Ipybind11/include -I/usr/local/google/home/rwgk/forked/pybind11/include -I/usr/local/google/home/rwgk/clone/pybind11/include /usr/local/google/home/rwgk/forked/pybind11/tests/test_numpy_array.cpp
```

```
In file included from /usr/local/google/home/rwgk/forked/pybind11/tests/test_numpy_array.cpp:10:
/usr/local/google/home/rwgk/forked/pybind11/include/pybind11/numpy.h: In static member function ‘static pybind11::detail::npy_api& pybind11::detail::npy_api::get()’:
/usr/local/google/home/rwgk/forked/pybind11/include/pybind11/numpy.h:258:82: error: ‘constinit’ variable ‘api_init’ does not have a constant initializer
  258 |         PYBIND11_CONSTINIT static LazyInitializeAtLeastOnceDestroyNever<npy_api> api_init;
      |                                                                                  ^~~~~~~~
```

```
In file included from /usr/local/google/home/rwgk/forked/pybind11/tests/test_numpy_array.cpp:10:
/usr/local/google/home/rwgk/forked/pybind11/include/pybind11/numpy.h: In static member function ‘static pybind11::object& pybind11::dtype::_dtype_from_pep3118()’:
/usr/local/google/home/rwgk/forked/pybind11/include/pybind11/numpy.h:697:13: error: ‘constinit’ variable ‘imported_obj’ does not have a constant initializer
  697 |             imported_obj;
      |             ^~~~~~~~~~~~
```

* Revert "Add `PYBIND11_CONSTINIT`, but it does not work for the current use cases:"

This reverts commit f07b28bda9.

* Reapply "Add `PYBIND11_CONSTINIT`, but it does not work for the current use cases:"

This reverts commit 36be645758.

* Add Default Member Initializer on `value_storage_` as suggested by @tkoeppe:

https://github.com/pybind/pybind11/pull/4877#issuecomment-1753201342

This fixes the errors reported under commit f07b28bda9.

* Fix copy-paste-missed-a-change mishap in commit 88cec1152a.

* Semi-paranoid placement new (based on https://github.com/pybind/pybind11/pull/4877#discussion_r1350573114).

* Move PYBIND11_CONSTINIT to detail/common.h

* Move code to the right places, rename new class and some variables.

* Fix oversight: update tests/extra_python_package/test_files.py

* Get the name right first.

* Use `std::call_once`, `std::atomic`, following a pattern developed by @tkoeppe

* Make the API more self-documenting (and possibly more easily reusable).

* google-clang-tidy IWYU fixes

* Rewrite comment as suggested by @tkoeppe

* Update test_exceptions.cpp and exceptions.rst

* Fix oversight in previous commit: add `PYBIND11_CONSTINIT`

* Make `get_stored()` non-const for simplicity.

As suggested by @tkoeppe: not seeing any reasonable use in which `get_stored` has to be const.

* Add comment regarding `KeyboardInterrupt` behavior, based heavily on information provided by @jbms.

* Add `assert(PyGILState_Check())` in `gil_scoped_release` ctor (simple & non-simple implementation) as suggested by @EthanSteinberg.

* Fix oversight in previous commit (missing include cassert).

* Remove use of std::atomic, leaving comments with rationale, why it is not needed.

* Rewrite comment re `std:optional` based on deeper reflection (aka 2nd thoughts).

* Additional comment with the conclusion of a discussion under PR #4877.

* https://github.com/pybind/pybind11/pull/4877#issuecomment-1757363179

* Small comment changes suggested by @tkoeppe.
2023-10-11 21:05:31 -07:00
dependabot[bot]
6c77208561
chore(deps): bump seanmiddleditch/gha-setup-ninja from 3 to 4 (#4875)
Bumps [seanmiddleditch/gha-setup-ninja](https://github.com/seanmiddleditch/gha-setup-ninja) from 3 to 4.
- [Release notes](https://github.com/seanmiddleditch/gha-setup-ninja/releases)
- [Commits](https://github.com/seanmiddleditch/gha-setup-ninja/compare/v3...v4)

---
updated-dependencies:
- dependency-name: seanmiddleditch/gha-setup-ninja
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-10-05 21:21:22 -07:00
Ralf W. Grosse-Kunstleve
7953d19a7c Merge branch 'master' into sh_merge_master 2023-10-03 22:45:09 -07:00
pre-commit-ci[bot]
2b2e4ca4a3
chore(deps): update pre-commit hooks (#4868)
* chore(deps): update pre-commit hooks

updates:
- [github.com/psf/black-pre-commit-mirror: 23.7.0 → 23.9.1](https://github.com/psf/black-pre-commit-mirror/compare/23.7.0...23.9.1)
- [github.com/astral-sh/ruff-pre-commit: v0.0.287 → v0.0.292](https://github.com/astral-sh/ruff-pre-commit/compare/v0.0.287...v0.0.292)
- [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](https://github.com/codespell-project/codespell/compare/v2.2.5...v2.2.6)
- [github.com/shellcheck-py/shellcheck-py: v0.9.0.5 → v0.9.0.6](https://github.com/shellcheck-py/shellcheck-py/compare/v0.9.0.5...v0.9.0.6)
- [github.com/PyCQA/pylint: v3.0.0a7 → v3.0.0](https://github.com/PyCQA/pylint/compare/v3.0.0a7...v3.0.0)

* Update .pre-commit-config.yaml

* style: pre-commit fixes

* Update .pre-commit-config.yaml

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
2023-10-03 13:13:44 -04:00
Mateusz Sokół
dd64df73c3
MAINT: Remove np.int_ (#4867) 2023-10-03 09:12:58 -07:00
Mateusz Sokół
0a756c0bb2
MAINT: Include numpy._core imports (#4857)
* MAINT: Include numpy._core imports

* style: pre-commit fixes

* Apply review comments

* style: pre-commit fixes

* Add no-inline attribute

* Select submodule name based on numpy version

* style: pre-commit fixes

* Update pre-commit check

* Add error_already_set and simplify if statement

* Update .pre-commit-config.yaml

Co-authored-by: Ralf W. Grosse-Kunstleve <rwgkio@gmail.com>

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Ralf W. Grosse-Kunstleve <rwgkio@gmail.com>
2023-09-27 10:22:04 -07:00
Ralf W. Grosse-Kunstleve
f468b0707e
Add 2 missing throw error_already_set(); (#4863)
Fixes oversights in PR #4570.
2023-09-27 09:55:49 -07:00
Oleksandr Pavlyk
7e5edbc947
Avoid copy in iteration by using const auto & (#4861)
This change is fixing a Coverity AUTO_CAUSES_COPY issues.
2023-09-25 08:38:21 -07:00
László Papp
5891867ee4
fix(cmake): support DEBUG_POSTFIX correctly (#4761)
* cmake: split extension

Into suffix and debug postfix. Pybind11 is currently treating both as
suffix, which is problematic when something else defines the
DEBUG_POSTFIX because they will be concatenated.

pybind11_extension sets SUFFIX to _d.something and if DEBUG_POSTFIX is
set to _d.

    _d + _d.something = _d_d.something

The issue has been reported at:

https://github.com/pybind/pybind11/issues/4699

* style: pre-commit fixes

* fix(cmake): support postfix for old FindPythonInterp mode too

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

---------

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2023-09-15 18:05:43 -04:00
Henry Schreiner
4fb111bd78
fix(cmake): correctly detect FindPython policy and better warning (#4806) 2023-09-15 17:59:30 -04:00
Ralf W. Grosse-Kunstleve
d06d53694a
Fix small bug introduced with PR #4735 (#4845)
* Bug fix: `result[0]` called if `result.empty()`

* Add unit test that fails without the fix.
2023-09-14 09:47:34 -07:00
Sergei Izmailov
8c7b8dd0ae
fix: Missing typed variants of iterator and iterable (#4832) 2023-09-12 12:48:27 -07:00
Sergei Izmailov
b4573674bc
Update render for buffer sequence and handle (#4831)
* fix: Add capitalize render name of `py::buffer` and `py::sequence`

* fix: Render `py::handle` same way as `py::object`

* tests: Fix tests `handle` -> `object`

* tests: Test capitaliation of `py::sequence` and `py::buffer`

* style: pre-commit fixes

* fix: Render `py::object` as `Any`

* Revert "fix: Render `py::object` as `Any`"

This reverts commit 7861dcfabb.

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
2023-09-12 12:47:39 -07:00
Sergei Izmailov
c9149d995c
fix: Use lowercase builtin collection names (#4833) 2023-09-12 12:46:58 -07:00
Ralf W. Grosse-Kunstleve
9110b7665e Tracking ci.yml changes from master. 2023-09-10 10:50:36 -07:00
Ralf W. Grosse-Kunstleve
35b26794ec Merge branch 'master' into sh_merge_master 2023-09-10 10:49:38 -07:00
Sergei Izmailov
c83605936b
feature: Support move-only iterators in py::make_*iterator (#4834)
* feature: Support move-only iterators in `py::make_*iterator`

* fix: Missing static assertion message

* fixup: Missing `explicit` in single argument constructors

* fix: Simplify tests: make existing iterator move-only

* fix: Missing `noexcept`
2023-09-07 05:57:39 -07:00
dependabot[bot]
4a2f7e4681
chore(deps): bump actions/checkout from 1 to 4 (#4836)
* chore(deps): bump actions/checkout from 1 to 4

Bumps [actions/checkout](https://github.com/actions/checkout) from 1 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v1...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

* Update .github/workflows/ci.yml

* actions/checkout@v1 for centos:7

* Fix oversight: centos:7 actually works with actions/checkout@v3

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
2023-09-06 15:57:18 -04:00
pre-commit-ci[bot]
467fe27bd9
chore(deps): update pre-commit hooks (#4838)
* chore(deps): update pre-commit hooks

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.0.281 → v0.0.287](https://github.com/astral-sh/ruff-pre-commit/compare/v0.0.281...v0.0.287)
- [github.com/pre-commit/mirrors-mypy: v1.4.1 → v1.5.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.4.1...v1.5.1)
- [github.com/asottile/blacken-docs: 1.15.0 → 1.16.0](https://github.com/asottile/blacken-docs/compare/1.15.0...1.16.0)
- [github.com/Lucas-C/pre-commit-hooks: v1.5.1 → v1.5.4](https://github.com/Lucas-C/pre-commit-hooks/compare/v1.5.1...v1.5.4)
- [github.com/PyCQA/pylint: v3.0.0a6 → v3.0.0a7](https://github.com/PyCQA/pylint/compare/v3.0.0a6...v3.0.0a7)

* style: pre-commit fixes

* Update pyproject.toml

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
2023-09-06 06:04:27 -07:00
Ralf W. Grosse-Kunstleve
c9638a1927
Help Coverty avoid generating a false positive. (#4817)
* Change variable name `it` to `curr_overl` to improve readability, add `assert()` in the only place where `curr_overl` could become `nullptr`.

* Move the `assert()` to where Coverty generates a false positive.

* variable name as suggested by @henryiii
2023-09-01 11:31:22 -07:00
Sergei Izmailov
db412e6e86
fix: Render py::function as Callable (#4829)
* fix: Render `py::function` as `Callable`

* style: pre-commit fixes

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2023-08-30 22:43:01 -07:00
Sergei Izmailov
e705fb5f27
Fix enum's __str__ docstring (#4827)
* fix: Enum __str__ function name

* tests: Test enum.__str__.__doc__
2023-08-30 14:20:46 -07:00
Ralf W. Grosse-Kunstleve
1adac5a5b1
PYBIND11_INTERNALS_VERSION bump for MSVC, piggy-backed on PR #4779. See comments there. (#4819) 2023-08-30 10:05:24 -07:00
Peter Würtz
76b8858110
fix: Different MSVC versions may be ABI incompatible, guard with _MSC_VER (#2898) (#4779) 2023-08-23 09:49:35 -07:00
Jean Elsner
b9359ceadb
Remove newlines from docstring signature (#4735)
* Remove newlines from docstring signature

* Jean/dev (#1)

Replace newlines in arg values with spaces

* style: pre-commit fixes

* Don't use std::find_if for C++ 11 compatibility

* Avoid implicit char to bool conversion

* Test default arguments for line breaks

* style: pre-commit fixes

* Separate Eigen tests

* style: pre-commit fixes

* Fix merge

* Try importing numpy

* Avoid unreferenced variable in catch block

* style: pre-commit fixes

* Update squash function

* Reduce try block

* Additional test cases

* style: pre-commit fixes

* Put statement inside braces

* Move string into function body

* Rename repr for better readability. Make constr explicit.

* Add multiline string default argument test case

* style: pre-commit fixes

* Add std namespace, do not modify string repr

* Test for all space chars, test str repr not modified

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2023-08-15 07:48:59 -07:00
Kenji
f47ff3280e
Fix grammar in functions.rst (#4791)
The previous sentence had an extra "a" before "several", which isn't right.
2023-08-15 07:09:13 -07:00
Ralf W. Grosse-Kunstleve
80bcd21fb7
[ci skip] Adopt nanobind config. (#4792) 2023-08-15 07:02:54 -07:00
Ralf W. Grosse-Kunstleve
add281a2da
Migrate to readthedocs configuration file v2¶ (#4789)
* Copy of recommded readthedocs configuration file v2

* [ci skip] It is now requirements (not requirements_file)
2023-08-14 21:46:17 -07:00
Henry Schreiner
9039e6ac42
chore: use 2x faster black mirror (#4784)
Committed via https://github.com/asottile/all-repos
2023-08-10 15:17:56 -04:00
Ralf W. Grosse-Kunstleve
23cd9128de test_type_caster_odr_guard: pytest.skip(...NVCOMPILER...) 2023-08-07 22:51:41 -07:00
Ralf W. Grosse-Kunstleve
b9e956b002 Tracking ci.yml changes from master. 2023-08-07 21:03:46 -07:00
Ralf W. Grosse-Kunstleve
6f702e7f0e Merge branch 'master' into smart_holder 2023-08-07 20:59:51 -07:00
Pieter P
4bf60c609a
Disable strip when build type is unset (#4454) (#4780) 2023-08-07 20:58:30 -07:00