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188 Commits

Author SHA1 Message Date
Ralf W. Grosse-Kunstleve
9005b55bdf Merge branch 'master' into sh_merge_master 2023-02-22 12:32:31 -08:00
Henry Schreiner
438034c5b8
chore: move to Ruff and add rules (#4483) 2023-02-22 06:18:55 -08:00
Ralf W. Grosse-Kunstleve
8c43d35210 Merge branch 'master' into sh_merge_master3 2023-02-07 23:54:04 -08:00
pre-commit-ci[bot]
8a90b36772
chore(deps): update pre-commit hooks (#4495) 
updates:
- [github.com/PyCQA/pylint: v2.16.0 → v2.16.1](https://github.com/PyCQA/pylint/compare/v2.16.0...v2.16.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2023-02-07 01:16:25 -05:00
Henry Schreiner
3efe9d4cb5
chore: update to black 23 (#4482) 
Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
 2023-02-01 14:23:37 -05:00
Ralf W. Grosse-Kunstleve
c71e3af73f
Bump isort version to 5.12.0 (#4480) 2023-01-31 22:44:18 -08:00
Ralf W. Grosse-Kunstleve
44d158ca50 Merge branch 'master' into sh_merge_master 2023-01-03 19:40:01 -08:00
pre-commit-ci[bot]
769fd3b889
chore(deps): update pre-commit hooks (#4439) 
updates:
- [github.com/asottile/pyupgrade: v3.3.0 → v3.3.1](https://github.com/asottile/pyupgrade/compare/v3.3.0...v3.3.1)
- [github.com/PyCQA/isort: 5.10.1 → 5.11.4](https://github.com/PyCQA/isort/compare/5.10.1...5.11.4)
- [github.com/psf/black: 22.10.0 → 22.12.0](https://github.com/psf/black/compare/22.10.0...22.12.0)
- [github.com/PyCQA/pylint: v2.15.8 → v2.15.9](https://github.com/PyCQA/pylint/compare/v2.15.8...v2.15.9)
- [github.com/shellcheck-py/shellcheck-py: v0.8.0.4 → v0.9.0.2](https://github.com/shellcheck-py/shellcheck-py/compare/v0.8.0.4...v0.9.0.2)
- [github.com/pre-commit/mirrors-clang-format: v15.0.4 → v15.0.6](https://github.com/pre-commit/mirrors-clang-format/compare/v15.0.4...v15.0.6)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2023-01-03 10:21:05 -05:00
Ralf W. Grosse-Kunstleve
0be972a9c1 Merge branch 'master' into sh_merge_master 2022-12-08 23:19:31 -08:00
pre-commit-ci[bot]
4768a6f8f5
chore(deps): update pre-commit hooks (#4386) 
* chore(deps): update pre-commit hooks

updates:
- [github.com/pre-commit/pre-commit-hooks: v4.3.0 → v4.4.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.3.0...v4.4.0)
- [github.com/asottile/pyupgrade: v3.2.0 → v3.3.0](https://github.com/asottile/pyupgrade/compare/v3.2.0...v3.3.0)
- [github.com/hadialqattan/pycln: v2.1.1 → v2.1.2](https://github.com/hadialqattan/pycln/compare/v2.1.1...v2.1.2)
- [github.com/PyCQA/flake8: 5.0.4 → 6.0.0](https://github.com/PyCQA/flake8/compare/5.0.4...6.0.0)
- [github.com/PyCQA/pylint: v2.15.5 → v2.15.8](https://github.com/PyCQA/pylint/compare/v2.15.5...v2.15.8)
- [github.com/pre-commit/mirrors-mypy: v0.982 → v0.991](https://github.com/pre-commit/mirrors-mypy/compare/v0.982...v0.991)
- [github.com/mgedmin/check-manifest: 0.48 → 0.49](https://github.com/mgedmin/check-manifest/compare/0.48...0.49)
- [github.com/pre-commit/mirrors-clang-format: v14.0.6 → v15.0.4](https://github.com/pre-commit/mirrors-clang-format/compare/v14.0.6...v15.0.4)

* style: pre-commit fixes

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-12-06 10:10:48 -08:00
Aaron Gokaslan
5b092eddde chore: sync blacken-docs hook with black (#4304) 2022-11-18 10:08:11 -08:00
pre-commit-ci[bot]
9bd8f656d3 chore(deps): update pre-commit hooks (#4302) 
updates:
- [github.com/asottile/pyupgrade: v2.38.2 → v3.2.0](https://github.com/asottile/pyupgrade/compare/v2.38.2...v3.2.0)
- [github.com/psf/black: 22.8.0 → 22.10.0](https://github.com/psf/black/compare/22.8.0...22.10.0)
- [github.com/PyCQA/pylint: v2.15.3 → v2.15.5](https://github.com/PyCQA/pylint/compare/v2.15.3...v2.15.5)
- [github.com/pre-commit/mirrors-mypy: v0.981 → v0.982](https://github.com/pre-commit/mirrors-mypy/compare/v0.981...v0.982)
- [github.com/codespell-project/codespell: v2.2.1 → v2.2.2](https://github.com/codespell-project/codespell/compare/v2.2.1...v2.2.2)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-11-18 10:08:11 -08:00
Aaron Gokaslan
0176632e8c
chore: sync blacken-docs hook with black (#4304) 2022-11-01 12:19:34 -04:00
pre-commit-ci[bot]
2441d25b26
chore(deps): update pre-commit hooks (#4302) 
updates:
- [github.com/asottile/pyupgrade: v2.38.2 → v3.2.0](https://github.com/asottile/pyupgrade/compare/v2.38.2...v3.2.0)
- [github.com/psf/black: 22.8.0 → 22.10.0](https://github.com/psf/black/compare/22.8.0...22.10.0)
- [github.com/PyCQA/pylint: v2.15.3 → v2.15.5](https://github.com/PyCQA/pylint/compare/v2.15.3...v2.15.5)
- [github.com/pre-commit/mirrors-mypy: v0.981 → v0.982](https://github.com/pre-commit/mirrors-mypy/compare/v0.981...v0.982)
- [github.com/codespell-project/codespell: v2.2.1 → v2.2.2](https://github.com/codespell-project/codespell/compare/v2.2.1...v2.2.2)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-11-01 00:10:13 -04:00
Ralf W. Grosse-Kunstleve
67561bc6d2 Merge branch 'master' into smart_holder 2022-10-09 21:55:40 -07:00
Henry Schreiner
8275b76912
ci: update pre-commit schedule (#4212) 2022-10-04 14:01:26 -04:00
pre-commit-ci[bot]
600d697648
[pre-commit.ci] pre-commit autoupdate (#4210) 
updates:
- [github.com/pre-commit/mirrors-mypy: v0.971 → v0.981](https://github.com/pre-commit/mirrors-mypy/compare/v0.971...v0.981)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-10-03 21:25:46 -04:00
pre-commit-ci[bot]
da8c730a62
[pre-commit.ci] pre-commit autoupdate (#4197) 
updates:
- [github.com/asottile/pyupgrade: v2.38.0 → v2.38.2](https://github.com/asottile/pyupgrade/compare/v2.38.0...v2.38.2)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-09-26 20:44:19 -04:00
pre-commit-ci[bot]
d02f219fb9
[pre-commit.ci] pre-commit autoupdate (#4189) 
updates:
- [github.com/asottile/pyupgrade: v2.37.3 → v2.38.0](https://github.com/asottile/pyupgrade/compare/v2.37.3...v2.38.0)
- [github.com/PyCQA/pylint: v2.15.2 → v2.15.3](https://github.com/PyCQA/pylint/compare/v2.15.2...v2.15.3)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-09-19 21:11:57 -04:00
Ralf W. Grosse-Kunstleve
e5a5a83c61 Merge branch 'master' into sh_merge_master 2022-09-15 05:35:19 -07:00
pre-commit-ci[bot]
64f7281874
[pre-commit.ci] pre-commit autoupdate (#4178) 
updates:
- [github.com/PyCQA/pylint: v2.15.0 → v2.15.2](https://github.com/PyCQA/pylint/compare/v2.15.0...v2.15.2)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-09-12 20:04:44 -04:00
pre-commit-ci[bot]
aa8f8baa4e
[pre-commit.ci] pre-commit autoupdate (#4171) 
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/psf/black: 22.6.0 → 22.8.0](https://github.com/psf/black/compare/22.6.0...22.8.0)

* Update .pre-commit-config.yaml

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
 2022-09-07 09:19:02 -04:00
pre-commit-ci[bot]
8756f16ed8
[pre-commit.ci] pre-commit autoupdate (#4151) 
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/Lucas-C/pre-commit-hooks: v1.3.0 → v1.3.1](https://github.com/Lucas-C/pre-commit-hooks/compare/v1.3.0...v1.3.1)
- [github.com/sirosen/texthooks: 0.3.1 → 0.4.0](https://github.com/sirosen/texthooks/compare/0.3.1...0.4.0)
- [github.com/PyCQA/pylint: v2.14.5 → v2.15.0](https://github.com/PyCQA/pylint/compare/v2.14.5...v2.15.0)
- [github.com/codespell-project/codespell: v2.1.0 → v2.2.1](https://github.com/codespell-project/codespell/compare/v2.1.0...v2.2.1)

* Introduce .codespell-ignore-lines for safer (line-based instead of word-based) suppressions.

* Fix two issues: 1. ensure sort order; 2. remove duplicates

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
 2022-08-29 21:59:48 -07:00
Ralf W. Grosse-Kunstleve
6df86934c2 Merge branch 'master' into sh_merge_master 2022-08-21 19:32:35 -07:00
Eli Schwartz
5bdd3d59be
feat(cmake): add installation support for pkg-config dependency detection (#4077) 
* add installation support for pkg-config dependency detection

pkg-config is a buildsystem-agnostic alternative to
`pybind11Config.cmake` that can be used from build systems other than
cmake.

Fixes #230

* tests: add test for pkg config

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
 2022-08-09 00:02:45 -04:00
pre-commit-ci[bot]
14c84654f8
[pre-commit.ci] pre-commit autoupdate (#4126) 
updates:
- [github.com/asottile/yesqa: v1.3.0 → v1.4.0](https://github.com/asottile/yesqa/compare/v1.3.0...v1.4.0)
- [github.com/PyCQA/flake8: 5.0.2 → 5.0.4](https://github.com/PyCQA/flake8/compare/5.0.2...5.0.4)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-08-08 21:15:43 -04:00
Ralf W. Grosse-Kunstleve
1f6e9a8945 Merge branch 'master' into sh_merge_master 2022-08-07 15:43:25 -07:00
pre-commit-ci[bot]
ba5ccd845a
[pre-commit.ci] pre-commit autoupdate (#4104) 
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/asottile/pyupgrade: v2.37.2 → v2.37.3](https://github.com/asottile/pyupgrade/compare/v2.37.2...v2.37.3)
- [github.com/hadialqattan/pycln: v2.0.4 → v2.1.1](https://github.com/hadialqattan/pycln/compare/v2.0.4...v2.1.1)
- [github.com/PyCQA/flake8: 4.0.1 → 5.0.2](https://github.com/PyCQA/flake8/compare/4.0.1...5.0.2)

* fix: minor touchups for flake8

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
 2022-08-03 11:38:07 -04:00
pre-commit-ci[bot]
aa953710c1
[pre-commit.ci] pre-commit autoupdate (#4090) 
updates:
- [github.com/asottile/pyupgrade: v2.37.1 → v2.37.2](https://github.com/asottile/pyupgrade/compare/v2.37.1...v2.37.2)
- [github.com/pre-commit/mirrors-mypy: v0.961 → v0.971](https://github.com/pre-commit/mirrors-mypy/compare/v0.961...v0.971)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-08-01 12:18:42 -04:00
Ralf W. Grosse-Kunstleve
4d774ec218 Merge branch 'master' into sh_merge_master 2022-07-21 06:53:22 -07:00
pre-commit-ci[bot]
ef7d971e03
[pre-commit.ci] pre-commit autoupdate (#4082) 
updates:
- [github.com/hadialqattan/pycln: v2.0.1 → v2.0.4](https://github.com/hadialqattan/pycln/compare/v2.0.1...v2.0.4)
- [github.com/PyCQA/pylint: v2.14.4 → v2.14.5](https://github.com/PyCQA/pylint/compare/v2.14.4...v2.14.5)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-07-18 19:39:10 -05:00
Ralf W. Grosse-Kunstleve
0ec9e31bbf Merge branch 'master' into sh_merge_master 2022-07-12 18:37:15 -07:00
pre-commit-ci[bot]
790241bce2
[pre-commit.ci] pre-commit autoupdate (#4058) 
updates:
- [github.com/asottile/pyupgrade: v2.34.0 → v2.37.1](https://github.com/asottile/pyupgrade/compare/v2.34.0...v2.37.1)
- [github.com/hadialqattan/pycln: v1.3.5 → v2.0.1](https://github.com/hadialqattan/pycln/compare/v1.3.5...v2.0.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-07-11 22:31:54 -04:00
Ralf W. Grosse-Kunstleve
bcd1800cf4 Turn off flake8 completely for ubench/ 
To suppress these new errors (apparently after a flake8 upgrade):

```
flake8...................................................................Failed
- hook id: flake8
- exit code: 1

ubench/holder_comparison.py:96:38: B023 Function definition does not bind loop variable 'nb1'.
                    assert int(round(nb1.sum())) == data_size
                                     ^
ubench/holder_comparison.py:96:53: B023 Function definition does not bind loop variable 'data_size'.
                    assert int(round(nb1.sum())) == data_size
                                                    ^
ubench/holder_comparison.py:99:25: B023 Function definition does not bind loop variable 'nb1'.
                        nb1.sum()
                        ^
ubench/holder_comparison.py:103:28: B023 Function definition does not bind loop variable 'nb1'.
                    assert nb1.add(nb2) == data_size
                           ^
ubench/holder_comparison.py:103:36: B023 Function definition does not bind loop variable 'nb2'.
                    assert nb1.add(nb2) == data_size
                                   ^
ubench/holder_comparison.py:103:44: B023 Function definition does not bind loop variable 'data_size'.
                    assert nb1.add(nb2) == data_size
                                           ^
ubench/holder_comparison.py:106:25: B023 Function definition does not bind loop variable 'nb1'.
                        nb1.add(nb2)
                        ^
ubench/holder_comparison.py:106:33: B023 Function definition does not bind loop variable 'nb2'.
                        nb1.add(nb2)
                                ^
ubench/holder_comparison_extract_sheet_data.py:21:16: B023 Function definition does not bind loop variable 'header_row'.
            if header_row:
               ^
ubench/holder_comparison_extract_sheet_data.py:22:20: B023 Function definition does not bind loop variable 'header'.
                if header is None:  # type: ignore[unreachable]
                   ^
ubench/holder_comparison_extract_sheet_data.py:23:36: B023 Function definition does not bind loop variable 'header_row'.
                    print(",".join(header_row))
                                   ^
ubench/holder_comparison_extract_sheet_data.py:25:28: B023 Function definition does not bind loop variable 'header'.
                    assert header == header_row
                           ^
ubench/holder_comparison_extract_sheet_data.py:25:38: B023 Function definition does not bind loop variable 'header_row'.
                    assert header == header_row
                                     ^
ubench/holder_comparison_extract_sheet_data.py:26:16: B023 Function definition does not bind loop variable 'data_row'.
            if data_row is not None:
               ^
ubench/holder_comparison_extract_sheet_data.py:27:32: B023 Function definition does not bind loop variable 'data_row'.
                print(",".join(data_row))  # type: ignore[unreachable]
                               ^
ubench/holder_comparison_extract_sheet_data.py:28:17: B023 Function definition does not bind loop variable 'data_row_buffer'.
                data_row_buffer.append(data_row)
                ^
ubench/holder_comparison_extract_sheet_data.py:28:40: B023 Function definition does not bind loop variable 'data_row'.
                data_row_buffer.append(data_row)
                                       ^
ubench/holder_comparison_extract_sheet_data.py:29:20: B023 Function definition does not bind loop variable 'header_row'.
            return header_row
                   ^
```
 2022-07-09 21:50:36 -07:00
Ralf W. Grosse-Kunstleve
27ce64fc43 Merge branch 'master' into sh_merge_master 2022-07-09 21:47:49 -07:00
pre-commit-ci[bot]
c42e3ab793
[pre-commit.ci] pre-commit autoupdate (#4041) 
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/psf/black: 22.3.0 → 22.6.0](https://github.com/psf/black/compare/22.3.0...22.6.0)
- [github.com/Lucas-C/pre-commit-hooks: v1.2.0 → v1.3.0](https://github.com/Lucas-C/pre-commit-hooks/compare/v1.2.0...v1.3.0)
- [github.com/PyCQA/pylint: v2.14.3 → v2.14.4](https://github.com/PyCQA/pylint/compare/v2.14.3...v2.14.4)
- [github.com/pre-commit/mirrors-clang-format: v14.0.5 → v14.0.6](https://github.com/pre-commit/mirrors-clang-format/compare/v14.0.5...v14.0.6)

* Update blacken-docs

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
 2022-07-04 22:21:59 -04:00
Ralf W. Grosse-Kunstleve
cad2609381 Merge branch 'master' into smart_holder 2022-06-27 22:24:23 -07:00
pre-commit-ci[bot]
dd3bf7fd12
[pre-commit.ci] pre-commit autoupdate (#4030) 
updates:
- [github.com/hadialqattan/pycln: v1.3.3 → v1.3.5](https://github.com/hadialqattan/pycln/compare/v1.3.3...v1.3.5)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-06-27 19:39:19 -04:00
pre-commit-ci[bot]
2ad974c945
[pre-commit.ci] pre-commit autoupdate (#4021) 
updates:
- [github.com/PyCQA/pylint: v2.14.1 → v2.14.3](https://github.com/PyCQA/pylint/compare/v2.14.1...v2.14.3)
- [github.com/pre-commit/mirrors-clang-format: v14.0.4-1 → v14.0.5](https://github.com/pre-commit/mirrors-clang-format/compare/v14.0.4-1...v14.0.5)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-06-21 14:36:49 -04:00
pre-commit-ci[bot]
21f0e72b0f
[pre-commit.ci] pre-commit autoupdate (#4003) 2022-06-13 21:02:25 -04:00
pre-commit-ci[bot]
c5fa3436c6
[pre-commit.ci] pre-commit autoupdate (#3951) 
updates:
- [github.com/asottile/pyupgrade: v2.32.1 → v2.33.0](https://github.com/asottile/pyupgrade/compare/v2.32.1...v2.33.0)
- [github.com/Lucas-C/pre-commit-hooks: v1.1.13 → v1.2.0](https://github.com/Lucas-C/pre-commit-hooks/compare/v1.1.13...v1.2.0)
- [github.com/hadialqattan/pycln: v1.3.2 → v1.3.3](https://github.com/hadialqattan/pycln/compare/v1.3.2...v1.3.3)
- [github.com/PyCQA/pylint: v2.13.8 → v2.14.1](https://github.com/PyCQA/pylint/compare/v2.13.8...v2.14.1)
- [github.com/pre-commit/mirrors-mypy: v0.950 → v0.960](https://github.com/pre-commit/mirrors-mypy/compare/v0.950...v0.960)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-06-06 17:56:18 -04:00
Ralf W. Grosse-Kunstleve
bdf22c8ee7 Merge branch 'master' into sh_merge_master 2022-05-17 16:37:59 -07:00
pre-commit-ci[bot]
ad146b2a18
[pre-commit.ci] pre-commit autoupdate (#3933) 
updates:
- [github.com/asottile/pyupgrade: v2.32.0 → v2.32.1](https://github.com/asottile/pyupgrade/compare/v2.32.0...v2.32.1)
- [github.com/pre-commit/mirrors-clang-format: v14.0.1 → v14.0.3](https://github.com/pre-commit/mirrors-clang-format/compare/v14.0.1...v14.0.3)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-05-09 18:44:21 -04:00
Ralf W. Grosse-Kunstleve
d5125eaf1e Merge branch 'master' into sh_merge_master 2022-05-05 16:12:58 -07:00
pre-commit-ci[bot]
9a16e55ad2
[pre-commit.ci] pre-commit autoupdate (#3903) 
updates:
- [github.com/hadialqattan/pycln: v1.3.1 → v1.3.2](https://github.com/hadialqattan/pycln/compare/v1.3.1...v1.3.2)
- [github.com/PyCQA/pylint: v2.13.5 → v2.13.8](https://github.com/PyCQA/pylint/compare/v2.13.5...v2.13.8)
- [github.com/pre-commit/mirrors-mypy: v0.942 → v0.950](https://github.com/pre-commit/mirrors-mypy/compare/v0.942...v0.950)
 2022-05-05 15:02:16 -04:00
Ralf W. Grosse-Kunstleve
2ee1e6445d Merge branch 'master' into sh_merge_master 2022-05-02 12:41:48 -07:00
pre-commit-ci[bot]
e8e229fa0b
[pre-commit.ci] pre-commit autoupdate (#3885) 
updates:
- [github.com/hadialqattan/pycln: v1.2.5 → v1.3.1](https://github.com/hadialqattan/pycln/compare/v1.2.5...v1.3.1)
- [github.com/pre-commit/mirrors-clang-format: v13.0.1 → v14.0.1](https://github.com/pre-commit/mirrors-clang-format/compare/v13.0.1...v14.0.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-04-18 17:44:01 -04:00
Ralf W. Grosse-Kunstleve
ab41fa281c Merge branch 'master' into sh_merge_master 2022-04-12 15:48:59 -07:00
pre-commit-ci[bot]
ad0de0f5a6
[pre-commit.ci] pre-commit autoupdate (#3863) 
updates:
- [github.com/pre-commit/pre-commit-hooks: v4.1.0 → v4.2.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.1.0...v4.2.0)
- [github.com/asottile/pyupgrade: v2.31.1 → v2.32.0](https://github.com/asottile/pyupgrade/compare/v2.31.1...v2.32.0)
- [github.com/PyCQA/pylint: v2.13.4 → v2.13.5](https://github.com/PyCQA/pylint/compare/v2.13.4...v2.13.5)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-04-11 19:50:42 -04:00
Henry Schreiner
9969f3b5b5
ci: drop win2016 (#3854) 
* ci: drop dead windows CI jobs

* chore: touch up pre-commit

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

* Update configure.yml

* Update configure.yml
 2022-04-11 16:54:33 -04:00
pre-commit-ci[bot]
f2f0c69096
[pre-commit.ci] pre-commit autoupdate (#3848) 
updates:
- [github.com/PyCQA/pylint: v2.13.2 → v2.13.4](https://github.com/PyCQA/pylint/compare/v2.13.2...v2.13.4)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-04-04 17:56:42 -04:00
Ralf W. Grosse-Kunstleve
4db19272cb Merge branch 'master' into sh_merge_master 2022-03-30 19:33:07 -07:00
Henry Schreiner
42d8593ad4
style: bump black (#3831) 
* style: bump black

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

* fix: pycln broken by typer breakage
 2022-03-28 17:24:59 -04:00
Ralf W. Grosse-Kunstleve
08ea85b0ac Merge branch 'master' into sh_merge_master 2022-03-21 22:59:39 -07:00
pre-commit-ci[bot]
67089cd3e6
[pre-commit.ci] pre-commit autoupdate (#3817) 
updates:
- [github.com/pre-commit/mirrors-mypy: v0.940 → v0.941](https://github.com/pre-commit/mirrors-mypy/compare/v0.940...v0.941)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-03-21 20:47:02 -04:00
pre-commit-ci[bot]
ed1407372d [pre-commit.ci] pre-commit autoupdate (#3800) 
updates:
- [github.com/asottile/pyupgrade: v2.31.0 → v2.31.1](https://github.com/asottile/pyupgrade/compare/v2.31.0...v2.31.1)
- [github.com/sirosen/texthooks: 0.2.2 → 0.3.1](https://github.com/sirosen/texthooks/compare/0.2.2...0.3.1)
- [github.com/hadialqattan/pycln: v1.2.4 → v1.2.5](https://github.com/hadialqattan/pycln/compare/v1.2.4...v1.2.5)
- [github.com/pre-commit/mirrors-mypy: v0.931 → v0.940](https://github.com/pre-commit/mirrors-mypy/compare/v0.931...v0.940)
- [github.com/mgedmin/check-manifest: 0.47 → 0.48](https://github.com/mgedmin/check-manifest/compare/0.47...0.48)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-03-18 11:15:52 -07:00
pre-commit-ci[bot]
f8a532a7de
[pre-commit.ci] pre-commit autoupdate (#3800) 
updates:
- [github.com/asottile/pyupgrade: v2.31.0 → v2.31.1](https://github.com/asottile/pyupgrade/compare/v2.31.0...v2.31.1)
- [github.com/sirosen/texthooks: 0.2.2 → 0.3.1](https://github.com/sirosen/texthooks/compare/0.2.2...0.3.1)
- [github.com/hadialqattan/pycln: v1.2.4 → v1.2.5](https://github.com/hadialqattan/pycln/compare/v1.2.4...v1.2.5)
- [github.com/pre-commit/mirrors-mypy: v0.931 → v0.940](https://github.com/pre-commit/mirrors-mypy/compare/v0.931...v0.940)
- [github.com/mgedmin/check-manifest: 0.47 → 0.48](https://github.com/mgedmin/check-manifest/compare/0.47...0.48)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-03-15 10:18:12 -04:00
Ralf W. Grosse-Kunstleve
eb6edd9fac Merge branch 'master' into sh_merge_master 2022-03-10 10:32:48 -08:00
pre-commit-ci[bot]
061c617707
[pre-commit.ci] pre-commit autoupdate (#3765) 
updates:
- [github.com/Lucas-C/pre-commit-hooks: v1.1.12 → v1.1.13](https://github.com/Lucas-C/pre-commit-hooks/compare/v1.1.12...v1.1.13)
- [github.com/hadialqattan/pycln: v1.2.0 → v1.2.4](https://github.com/hadialqattan/pycln/compare/v1.2.0...v1.2.4)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-02-28 21:35:43 -05:00
Ralf W. Grosse-Kunstleve
be43439670 Merge branch 'master' into sh_merge_master 2022-02-23 15:47:03 -08:00
pre-commit-ci[bot]
91f597be5a
[pre-commit.ci] pre-commit autoupdate (#3754) 
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/hadialqattan/pycln: v1.1.0 → v1.2.0](https://github.com/hadialqattan/pycln/compare/v1.1.0...v1.2.0)
- [github.com/pre-commit/mirrors-clang-format: v13.0.0 → v13.0.1](https://github.com/pre-commit/mirrors-clang-format/compare/v13.0.0...v13.0.1)

* Update .pre-commit-config.yaml

* ci: specify which windows image to use

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
 2022-02-23 17:56:41 -05:00
Ralf W. Grosse-Kunstleve
bc2cec0783 Merge branch 'master' into sh_merge_master 2022-02-16 07:15:34 -08:00
Henry Schreiner
4b42c37191
style: pylint (#3720) 
* fix: add pylint and fix issue

* chore: add pylint to pre-commit

* fix: local variable warning surfaced mistake in intree
 2022-02-15 17:48:33 -05:00
pre-commit-ci[bot]
0986af6182
[pre-commit.ci] pre-commit autoupdate (#3672) 
updates:
- [github.com/Lucas-C/pre-commit-hooks: v1.1.11 → v1.1.12](https://github.com/Lucas-C/pre-commit-hooks/compare/v1.1.11...v1.1.12)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-02-15 11:27:00 -05:00
Ralf W. Grosse-Kunstleve
d5e302ce46 Removing uses of env.PY2 and env.PY (no longer available). 
smart_holder_type_casters.h tweaks:
    * Removing MSVC 2015 workaround.
    * Manually adding braces to pre-empt clang-tidy issue (involving `#ifdef`).
    * Removing `// clang-format off` & `on`.
    * One manual line break (moving comment above line).

Adding mypy type information for ubench/*.py
 2022-02-14 18:51:58 -08:00
Ralf W. Grosse-Kunstleve
e1751c04f0 Merge branch 'master' into sh_merge_master_after_clang-format_etc 
First pass manually resolving the many merge conflicts.
 2022-02-14 14:36:08 -08:00
Henry Schreiner
522c59ceb2
chore: drop Python 3.5 (#3719) 
* chore: drop Python 3.5 support

* chore: more fstrings with flynt's help

* ci: drop Python 3.5

* chore: bump dependency versions

* docs: touch up py::args

* tests: remove deprecation warning

* Ban smartquotes

* Very minor tweaks (by-product of reviewing PR #3719).

Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
 2022-02-11 19:06:16 -05:00
Ralf W. Grosse-Kunstleve
6493f496e3
Python 2 removal part 1: tests (C++ code is intentionally ~untouched) (#3688) 
* `#error BYE_BYE_GOLDEN_SNAKE`

* Removing everything related to 2.7 from ci.yml

* Commenting-out Centos7

* Removing `PYTHON: 27` from .appveyor.yml

* "PY2" removal, mainly from tests. C++ code is not touched.

* Systematic removal of `u` prefix from `u"..."` and `u'...'` literals. Collateral cleanup of a couple minor other things.

* Cleaning up around case-insensitive hits for `[^a-z]py.*2` in tests/.

* Removing obsolete Python 2 mention in compiling.rst

* Proper `#error` for Python 2.

* Using PY_VERSION_HEX to guard `#error "PYTHON 2 IS NO LONGER SUPPORTED.`

* chore: bump pre-commit

* style: run pre-commit for pyupgrade 3+

* tests: use sys.version_info, not PY

* chore: more Python 2 removal

* Uncommenting Centos7 block (PR #3691 showed that it is working again).

* Update pre-commit hooks

* Fix pre-commit hook

* refactor: remove Python 2 from CMake

* refactor: remove Python 2 from setup code

* refactor: simplify, better static typing

* feat: fail with nice messages

* refactor: drop Python 2 C++ code

* docs: cleanup for Python 3

* revert: intree

revert: intree

* docs: minor touchup to py2 statement

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
 2022-02-10 18:28:08 -08:00
Ralf W. Grosse-Kunstleve
ec24786eab
Fully-automatic clang-format with include reordering (#3713) 
* chore: add clang-format

* Removing check-style (Classic check-style)

Ported from @henryiii's 53056b1b0e

* Automatic clang-format changes (NO manual changes).

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
 2022-02-10 12:17:07 -08:00
Ralf W. Grosse-Kunstleve
ea0c1e77c8 Merge branch 'master' into sh_merge_master 2022-01-11 17:48:37 -08:00
pre-commit-ci[bot]
b66328b043
[pre-commit.ci] pre-commit autoupdate (#3609) 
updates:
- [github.com/pre-commit/mirrors-mypy: v0.930 → v0.931](https://github.com/pre-commit/mirrors-mypy/compare/v0.930...v0.931)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-01-10 21:13:24 -05:00
Ralf W. Grosse-Kunstleve
73197b392a Merge branch 'master' into smart_holder 2022-01-03 15:56:25 -08:00
pre-commit-ci[bot]
2cd32e5d54
[pre-commit.ci] pre-commit autoupdate (#3589) 
updates:
- [github.com/asottile/pyupgrade: v2.29.1 → v2.31.0](https://github.com/asottile/pyupgrade/compare/v2.29.1...v2.31.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-01-03 15:55:21 -08:00
Ralf W. Grosse-Kunstleve
388c03b18c Merge branch 'master' into sh_merge_master_clean 2021-12-29 13:24:20 -08:00
pre-commit-ci[bot]
89769e6e6d
[pre-commit.ci] pre-commit autoupdate (#3574) 
updates:
- [github.com/pre-commit/pre-commit-hooks: v4.0.1 → v4.1.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.0.1...v4.1.0)
- [github.com/pre-commit/mirrors-mypy: v0.920 → v0.930](https://github.com/pre-commit/mirrors-mypy/compare/v0.920...v0.930)
- [github.com/shellcheck-py/shellcheck-py: v0.8.0.2 → v0.8.0.3](https://github.com/shellcheck-py/shellcheck-py/compare/v0.8.0.2...v0.8.0.3)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2021-12-27 18:28:30 -05:00
pre-commit-ci[bot]
d0406c747e
[pre-commit.ci] pre-commit autoupdate (#3563) 
updates:
- [github.com/pre-commit/mirrors-mypy: v0.910-1 → v0.920](https://github.com/pre-commit/mirrors-mypy/compare/v0.910-1...v0.920)
- [github.com/shellcheck-py/shellcheck-py: v0.8.0.1 → v0.8.0.2](https://github.com/shellcheck-py/shellcheck-py/compare/v0.8.0.1...v0.8.0.2)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2021-12-20 23:11:48 -05:00
pre-commit-ci[bot]
59aa99860c
[pre-commit.ci] pre-commit autoupdate (#3533) 
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/psf/black: 21.11b1 → 21.12b0](https://github.com/psf/black/compare/21.11b1...21.12b0)

* Keep blacken-docs in sync

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
 2021-12-06 17:12:03 -05:00
Ralf W. Grosse-Kunstleve
e94b98fd76 Merge branch 'master' into smart_holder 2021-11-22 17:03:58 -08:00
pre-commit-ci[bot]
fe65693c72
[pre-commit.ci] pre-commit autoupdate (#3500) 
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/asottile/pyupgrade: v2.29.0 → v2.29.1](https://github.com/asottile/pyupgrade/compare/v2.29.0...v2.29.1)
- [github.com/psf/black: 21.10b0 → 21.11b1](https://github.com/psf/black/compare/21.10b0...21.11b1)
- [github.com/asottile/blacken-docs: v1.11.0 → v1.12.0](https://github.com/asottile/blacken-docs/compare/v1.11.0...v1.12.0)

* Keep blacken-docs and black in sync.

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Aaron Gokaslan <aaronGokaslan@gmail.com>
 2021-11-22 16:25:35 -05:00
Ralf W. Grosse-Kunstleve
e57afe23f7 Merge branch 'master' into smart_holder 2021-11-20 09:35:40 -08:00
pre-commit-ci[bot]
9422d98fcc
[pre-commit.ci] pre-commit autoupdate (#3473) 
updates:
- [github.com/PyCQA/isort: 5.10.0 → 5.10.1](https://github.com/PyCQA/isort/compare/5.10.0...5.10.1)
- [github.com/shellcheck-py/shellcheck-py: v0.7.2.1 → v0.8.0.1](https://github.com/shellcheck-py/shellcheck-py/compare/v0.7.2.1...v0.8.0.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2021-11-15 22:48:39 -05:00
Ralf W. Grosse-Kunstleve
f4fab85d87 Merge branch 'master' into sh_merge_master 2021-11-15 14:43:08 -08:00
Henry Schreiner
270b11d502
Revert "style: drop pycln" (#3466) 
* Revert "style: drop pycln (#3397)"

This reverts commit 606f81a966.

* Update .pre-commit-config.yaml
 2021-11-13 21:32:58 -05:00
pre-commit-ci[bot]
b322018e15
[pre-commit.ci] pre-commit autoupdate (#3449) 
updates:
- [github.com/PyCQA/isort: 5.9.3 → 5.10.0](https://github.com/PyCQA/isort/compare/5.9.3...5.10.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2021-11-08 15:56:20 -05:00
Ralf W. Grosse-Kunstleve
58c7f076bc Merge branch 'master' into sh_merge_master 2021-11-07 16:26:55 -08:00
pre-commit-ci[bot]
6de30d3172
[pre-commit.ci] pre-commit autoupdate (#3432) 
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/psf/black: 21.9b0 → 21.10b0](https://github.com/psf/black/compare/21.9b0...21.10b0)

* Update blacken-docs too

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
 2021-11-01 17:22:12 -04:00
Ralf W. Grosse-Kunstleve
4958fd9aa1 Merge branch 'master' into sh_merge_master 2021-10-26 12:10:34 -07:00
pre-commit-ci[bot]
d45a88105c
[pre-commit.ci] pre-commit autoupdate (#3409) 
updates:
- [github.com/asottile/yesqa: v1.2.3 → v1.3.0](https://github.com/asottile/yesqa/compare/v1.2.3...v1.3.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2021-10-25 16:06:13 -04:00
Henry Schreiner
606f81a966
style: drop pycln (#3397) 2021-10-22 16:38:40 -04:00
Ralf W. Grosse-Kunstleve
fd68dede10 Merge branch 'master' into sh_merge_master 2021-10-11 13:18:33 -07:00
pre-commit-ci[bot]
02c05573d9
[pre-commit.ci] pre-commit autoupdate (#3353) 
updates:
- [github.com/PyCQA/flake8: 3.9.2 → 4.0.1](https://github.com/PyCQA/flake8/compare/3.9.2...4.0.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2021-10-11 16:03:19 -04:00
Aaron Gokaslan
f4c81e0877
maint: Add additional linter-related pre-commit hooks (#3337) 
* Add additional pygrep pre-commit hooks

* Remove useless noqas with hook

* Fix all single rst backticks

* Simplify mypy pre-commit hook with upstream fixes

* Add back missing comment

* Add one last pygrep hook
 2021-10-08 08:38:04 -04:00
Ralf W. Grosse-Kunstleve
5a90dae7fe Merge branch 'master' into smart_holder 2021-10-06 00:47:43 -07:00
pre-commit-ci[bot]
97976c16fb
[pre-commit.ci] pre-commit autoupdate (#3325) 
updates:
- [github.com/asottile/pyupgrade: v2.28.0 → v2.29.0](https://github.com/asottile/pyupgrade/compare/v2.28.0...v2.29.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2021-10-04 16:38:31 -04:00
Ralf W. Grosse-Kunstleve
a011e1257e Merge branch 'master' into smart_holder 2021-09-30 11:56:53 -07:00
pre-commit-ci[bot]
6be64304b7
[pre-commit.ci] pre-commit autoupdate (#3312) 
updates:
- [github.com/asottile/pyupgrade: v2.26.0 → v2.28.0](https://github.com/asottile/pyupgrade/compare/v2.26.0...v2.28.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2021-09-28 10:09:08 -04:00
Ralf W. Grosse-Kunstleve
c13817d775 Merge branch 'master' into sh_merge_master 2021-09-23 08:56:16 -07:00
Aaron Gokaslan
0fb981b219
Add blacken-docs and pycln pre-commit hooks (#3292) 
* Apply blacken-docs and fix language-hints

* Add blacken-docs pre-commit hook

* Add pycln pre-commit hook

* Enable a few builtin hooks

* Black no longer ignores pyi files
 2021-09-22 15:38:50 -04:00
Ralf W. Grosse-Kunstleve
a5ec28ffe8 Merge branch 'master' into smart_holder 2021-09-20 19:05:52 -07:00
pre-commit-ci[bot]
077a16e9d1
[pre-commit.ci] pre-commit autoupdate (#3286) 
updates:
- [github.com/psf/black: 21.8b0 → 21.9b0](https://github.com/psf/black/compare/21.8b0...21.9b0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2021-09-20 16:18:09 -04:00