Commit Graph

590 Commits

Author SHA1 Message Date
Ralf W. Grosse-Kunstleve
fd68dede10 Merge branch 'master' into sh_merge_master 2021-10-11 13:18:33 -07:00
Aaron Gokaslan
f4c81e0877
maint: Add additional linter-related pre-commit hooks (#3337)
* Add additional pygrep pre-commit hooks

* Remove useless noqas with hook

* Fix all single rst backticks

* Simplify mypy pre-commit hook with upstream fixes

* Add back missing comment

* Add one last pygrep hook
2021-10-08 08:38:04 -04:00
Bruce Merry
47ed124f37
Fix some formatting in the v2.8.0 changelog (#3339)
[skipci]
2021-10-08 08:27:38 -04:00
Ralf W. Grosse-Kunstleve
5a90dae7fe Merge branch 'master' into smart_holder 2021-10-06 00:47:43 -07:00
Henry Schreiner
ba9f919b85
chore: get back to work after 2.8.0 2021-10-04 17:37:27 -04:00
Henry Schreiner
591db0b930 docs: update CHANGELOG for 2.8 2021-10-04 15:20:10 -04:00
Ralf W. Grosse-Kunstleve
a011e1257e Merge branch 'master' into smart_holder 2021-09-30 11:56:53 -07:00
xaedes
b4e1ab8caa
Docs: Demonstrate non-enum internal types in example (#3314)
* Docs: Demonstrate non-enum internal types in example

Previously example only demonstrated internal enumeration type. 
To show that it works for other internal types the same way the example was updated with an additional struct Pet::Attributes type.

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2021-09-30 14:45:06 -04:00
Philipp Bucher
c9bbf8d2ee docs: fix minor typo (#3311) 2021-09-28 10:17:52 -04:00
Henry Schreiner
6bce3bd72e
docs: update CHANGELOG (#3304) 2021-09-24 23:48:38 -04:00
Ralf W. Grosse-Kunstleve
55fcade987 Merge branch 'master' into sh_merge_master 2021-09-24 12:13:34 -07:00
Jeremy Maitin-Shepard
62c4909cce
Add custom_type_setup attribute (#3287)
* Fix `pybind11::object::operator=` to be safe if `*this` is accessible from Python

* Add `custom_type_setup` attribute

This allows for custom modifications to the PyHeapTypeObject prior to
calling `PyType_Ready`.  This may be used, for example, to define
`tp_traverse` and `tp_clear` functions.
2021-09-24 12:08:22 -07:00
Henry Schreiner
21282e645a
feat: reapply fixed version of #3271 (#3293)
* Add make_value_iterator (#3271)

* Add make_value_iterator

This is the counterpart to make_key_iterator, and will allow
implementing a `value` method in `bind_map` (although doing so is left
for a subsequent PR).

I made a few design changes to reduce copy-and-paste boilerplate.
Previously detail::iterator_state had a boolean template parameter to
indicate whether it was being used for make_iterator or
make_key_iterator. I replaced the boolean with a class that determines
how to dereference the iterator. This allows for a generic
implementation of `__next__`.

I also added the ValueType and Extra... parameters to the iterator_state
template args, because I think it was a bug that they were missing: if
make_iterator is called twice with different values of these, only the
first set has effect (because the state class is only registered once).
There is still a potential issue in that the *values* of the extra
arguments are latched on the first call, but since most policies are
empty classes this should be even less common.

* Add some remove_cv_t to appease clang-tidy

* Make iterator_access and friends take reference

For some reason I'd accidentally made it take a const value, which
caused some issues with third-party packages.

* Another attempt to remove remove_cv_t from iterators

Some of the return types were const (non-reference) types because of the
pecularities of decltype: `decltype((*it).first)` is the *declared* type
of the member of the pair, rather than the type of the expression. So if
the reference type of the iterator is `pair<const int, int> &`, then the
decltype is `const int`. Wrapping an extra set of parentheses to form
`decltype(((*it).first))` would instead give `const int &`.

This means that the existing make_key_iterator actually returns by value
from `__next__`, rather than by reference. Since for mapping types, keys
are always const, this probably hasn't been noticed, but it will affect
make_value_iterator if the Python code tries to mutate the returned
objects. I've changed things to use double parentheses so that
make_iterator, make_key_iterator and make_value_iterator should now all
return the reference type of the iterator. I'll still need to add a test
for that; for now I'm just checking whether I can keep Clang-Tidy happy.

* Add back some NOLINTNEXTLINE to appease Clang-Tidy

This is favoured over using remove_cv_t because in some cases a const
value return type is deliberate (particularly for Eigen).

* Add a unit test for iterator referencing

Ensure that make_iterator, make_key_iterator and make_value_iterator
return references to the container elements, rather than copies. The
test for make_key_iterator fails to compile on master, which gives me
confidence that this branch has fixed it.

* Make the iterator_access etc operator() const

I'm actually a little surprised it compiled at all given that the
operator() is called on a temporary, but I don't claim to fully
understand all the different value types in C++11.

* Attempt to work around compiler bugs

https://godbolt.org/ shows an example where ICC gets the wrong result
for a decltype used as the default for a template argument, and CI also
showed problems with PGI. This is a shot in the dark to see if it fixes
things.

* Make a test constructor explicit (Clang-Tidy)

* Fix unit test on GCC 4.8.5

It seems to require the arguments to the std::pair constructor to be
implicitly convertible to the types in the pair, rather than just
requiring is_constructible.

* Remove DOXYGEN_SHOULD_SKIP_THIS guards

Now that a complex decltype expression has been replaced by a simpler
nested type, I'm hoping Doxygen will be able to build it without issues.

* Add comment to explain iterator_state template params

* fix: regression in #3271

Co-authored-by: Bruce Merry <1963944+bmerry@users.noreply.github.com>
2021-09-23 15:06:07 -04:00
Ralf W. Grosse-Kunstleve
c13817d775 Merge branch 'master' into sh_merge_master 2021-09-23 08:56:16 -07:00
Henry Schreiner
2fa3fcfda5 Revert "Add make_value_iterator (#3271)"
This reverts commit ee0c5ee405.
2021-09-22 23:10:03 -04:00
Aaron Gokaslan
0fb981b219
Add blacken-docs and pycln pre-commit hooks (#3292)
* Apply blacken-docs and fix language-hints

* Add blacken-docs pre-commit hook

* Add pycln pre-commit hook

* Enable a few builtin hooks

* Black no longer ignores pyi files
2021-09-22 15:38:50 -04:00
Ralf W. Grosse-Kunstleve
87624157cf Merge branch 'master' into smart_holder 2021-09-21 12:50:59 -07:00
Bruce Merry
ee0c5ee405
Add make_value_iterator (#3271)
* Add make_value_iterator

This is the counterpart to make_key_iterator, and will allow
implementing a `value` method in `bind_map` (although doing so is left
for a subsequent PR).

I made a few design changes to reduce copy-and-paste boilerplate.
Previously detail::iterator_state had a boolean template parameter to
indicate whether it was being used for make_iterator or
make_key_iterator. I replaced the boolean with a class that determines
how to dereference the iterator. This allows for a generic
implementation of `__next__`.

I also added the ValueType and Extra... parameters to the iterator_state
template args, because I think it was a bug that they were missing: if
make_iterator is called twice with different values of these, only the
first set has effect (because the state class is only registered once).
There is still a potential issue in that the *values* of the extra
arguments are latched on the first call, but since most policies are
empty classes this should be even less common.

* Add some remove_cv_t to appease clang-tidy

* Make iterator_access and friends take reference

For some reason I'd accidentally made it take a const value, which
caused some issues with third-party packages.

* Another attempt to remove remove_cv_t from iterators

Some of the return types were const (non-reference) types because of the
pecularities of decltype: `decltype((*it).first)` is the *declared* type
of the member of the pair, rather than the type of the expression. So if
the reference type of the iterator is `pair<const int, int> &`, then the
decltype is `const int`. Wrapping an extra set of parentheses to form
`decltype(((*it).first))` would instead give `const int &`.

This means that the existing make_key_iterator actually returns by value
from `__next__`, rather than by reference. Since for mapping types, keys
are always const, this probably hasn't been noticed, but it will affect
make_value_iterator if the Python code tries to mutate the returned
objects. I've changed things to use double parentheses so that
make_iterator, make_key_iterator and make_value_iterator should now all
return the reference type of the iterator. I'll still need to add a test
for that; for now I'm just checking whether I can keep Clang-Tidy happy.

* Add back some NOLINTNEXTLINE to appease Clang-Tidy

This is favoured over using remove_cv_t because in some cases a const
value return type is deliberate (particularly for Eigen).

* Add a unit test for iterator referencing

Ensure that make_iterator, make_key_iterator and make_value_iterator
return references to the container elements, rather than copies. The
test for make_key_iterator fails to compile on master, which gives me
confidence that this branch has fixed it.

* Make the iterator_access etc operator() const

I'm actually a little surprised it compiled at all given that the
operator() is called on a temporary, but I don't claim to fully
understand all the different value types in C++11.

* Attempt to work around compiler bugs

https://godbolt.org/ shows an example where ICC gets the wrong result
for a decltype used as the default for a template argument, and CI also
showed problems with PGI. This is a shot in the dark to see if it fixes
things.

* Make a test constructor explicit (Clang-Tidy)

* Fix unit test on GCC 4.8.5

It seems to require the arguments to the std::pair constructor to be
implicitly convertible to the types in the pair, rather than just
requiring is_constructible.

* Remove DOXYGEN_SHOULD_SKIP_THIS guards

Now that a complex decltype expression has been replaced by a simpler
nested type, I'm hoping Doxygen will be able to build it without issues.

* Add comment to explain iterator_state template params
2021-09-21 13:37:19 -04:00
Ralf W. Grosse-Kunstleve
03d409b4a0 Merge branch 'master' into sh_merge_master 2021-09-20 05:57:17 -07:00
Henry Schreiner
04dd3262f0
docs: update CHANGELOG (#3276) 2021-09-17 17:28:26 -04:00
Ralf W. Grosse-Kunstleve
94a5c673bc Merge branch 'master' into sh_merge_master 2021-09-08 18:56:35 -07:00
Thomas Ballinger
39a0aac88e
docs fix to avoid nonexistent SmartCompile (#3241) 2021-09-08 14:00:00 -04:00
Ralf W. Grosse-Kunstleve
a655f95a83 Merge branch 'master' into sh_merge_master 2021-08-26 14:46:44 -07:00
Jouke Witteveen
031a700dfd
Add make_simple_namespace function and tests (#2840)
Co-authored-by: Jouke Witteveen <j.witteveen@cosine.nl>
2021-08-26 08:04:22 -07:00
Ralf W. Grosse-Kunstleve
c8ce4b8df8
Clone of @virtuald's PR #2112 with minor enhancements. (#3215)
* Add py::raise_from to enable chaining exceptions on Python 3.3+

* Use 'raise from' in initialization

* Documenting the exact base version of _PyErr_FormatVFromCause, adding back `assert`s.

Co-authored-by: Dustin Spicuzza <dustin@virtualroadside.com>
2021-08-23 17:30:01 -07:00
Ralf W. Grosse-Kunstleve
8865d28317 Automatic part of merging branch 'master' into sh_merge_master.
The only manual intervention was to remove the merge conflict markers in pybind11.h.

TODO in separate commit: complete removal of the obsolete detail/pragma_warning_block.h.
2021-08-14 07:54:40 -07:00
Aaron Gokaslan
9df2f1ff13
maint(precommit): Apply isort (#3195)
* Apply isort

* Tweak isort config

* Add env.py as a known_first_party

* Add one missing known first party

* Make config compat with older isort versions

* Add another comment

* Revert pyproject setting
2021-08-13 12:37:05 -04:00
Henry Schreiner
a2b78a8c27
chore: changelog update (#3163)
* chore: changelog update

* Update docs/changelog.rst
2021-08-03 13:16:14 -04:00
Ralf W. Grosse-Kunstleve
7cc433ca7f Merge branch 'master' into smart_holder 2021-07-21 06:56:03 -07:00
jesse-sony
d65edfb024
Feature/local exception translator (#2650)
* Create a module_internals struct

Since we now have two things that are going to be module local, it felt
correct to add a struct to manage them.

* Add local exception translators

These are added via the  register_local_exception_translator function
and are then applied before the global translators

* Add unit tests to show the local exception translator works

* Fix a bug in the unit test with the string value of KeyError

* Fix a formatting issue

* Rename registered_local_types_cpp()

Rename it to get_registered_local_types_cpp() to disambiguate from the
new member of module_internals

* Add additional comments to new local exception code path

* Add a register_local_exception function

* Add additional unit tests for register_local_exception

* Use get_local_internals like get_internals

* Update documentation for new local exception feature

* Add back a missing space

* Clean-up some issues in the docs

* Remove the code duplication when translating exceptions

Separated out the exception processing into a standalone function in the
details namespace.

Clean-up some comments as per PR notes as well

* Remove the code duplication in register_exception

* Cleanup some formatting things caught by clang-format

* Remove the templates from exception translators

But I added a using declaration to alias the type.

* Remove the extra local from local_internals variable names

* Add an extra explanatory comment to local_internals

* Fix a typo in the code
2021-07-21 05:22:18 -07:00
Ralf W. Grosse-Kunstleve
a1918dd6d9 Merge branch 'master' into smart_holder 2021-07-17 10:32:03 -07:00
Henry Schreiner
74935f8d67
chore: post-release (#3128) 2021-07-17 11:50:42 -04:00
Ralf W. Grosse-Kunstleve
02dc01b536 Merge branch 'master' into smart_holder 2021-07-16 08:14:43 -07:00
Henry Schreiner
65e95ea867
chore: bump to 2.7.0 (#3123) 2021-07-16 09:27:47 -04:00
Ralf W. Grosse-Kunstleve
5548f24b37 Merge branch 'master' into smart_holder 2021-07-15 20:43:55 -07:00
Henry Schreiner
6642f389dc
docs: update changelog (#3122) 2021-07-15 20:00:07 -04:00
Ralf W. Grosse-Kunstleve
1f04229733 Merge branch 'master' into smart_holder 2021-07-15 15:05:40 -07:00
Axel Huebl
55f6f6e9bf
Fix: RTD Docutils Build (#3119)
The docutils 0.17+ release uses more semantic HTML5 tags, which
the RTD theme does not (yet) know.

This breaks side bar, lists and other elements.
2021-07-15 15:41:36 -04:00
Henry Schreiner
31843d455d
docs: reduce visibility of 3.9.0 warning (#3105) 2021-07-15 15:01:13 -04:00
Ralf W. Grosse-Kunstleve
88546fff7d Fixing merge conflict. 2021-07-15 06:23:06 -07:00
Henry Schreiner
cd061aeef1
style: pre-commit cleanup (#3111)
* style: disallow PyTest (should be pytest)

* style: cleanup spell checking a bit

* style: add a few items to the .gitignore
2021-07-14 16:49:13 -04:00
Ralf W. Grosse-Kunstleve
279c93654e Merge branch 'master' into smart_holder 2021-07-13 21:24:02 -07:00
Antony Lee
1be0a0a610
Add helper to build in-tree extensions. (#2831)
For single-file extensions, a convenient pattern offered by cython
is to place the source files directly in the python source tree
(`foo/__init__.py`, `foo/ext.pyx`), deriving the package names from
their filesystem location.  Adapt this pattern for pybind11, using an
`intree_extensions` helper, which should be thought of as the moral
equivalent to `cythonize`.

Differences with cythonize: I chose not to include globbing support
(`intree_extensions(glob.glob("**/*.cpp"))` seems sufficient), nor to
provide extension-customization kwargs (directly setting the attributes
on the resulting Pybind11Extension objects seems sufficient).

We could choose to have `intree_extension` (singular instead) and make
users write `[*map(intree_extension, glob.glob("**/*.cpp"))]`; no strong
opinion here.

Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
2021-07-13 17:21:55 -04:00
Ralf W. Grosse-Kunstleve
88cc350075 Merge branch 'master' into smart_holder 2021-07-13 05:57:50 -07:00
Henry Schreiner
6a644c8f04
docs: update changelog (#3099)
* docs: update changelog

* docs: add one more and merge tidy
2021-07-13 00:08:29 -04:00
Ralf W. Grosse-Kunstleve
678538f097 Merge branch 'master' into smart_holder 2021-07-12 16:59:58 -07:00
Ralf W. Grosse-Kunstleve
75090647ce
More precise return_value_policy::automatic documentation. (#2920)
* Adding test_return_vector_bool_raw_ptr to test_stl.py.

* First attempt to make the documentation more accurate, but not trying to be comprehensive, to not bloat the reference table with too many details.

* Fixing minor oversights.

* Applying reviewer suggestion.
2021-07-12 16:56:10 -07:00
Ralf W. Grosse-Kunstleve
932a4cf409 Merge branch 'master' into smart_holder 2021-07-12 14:07:26 -07:00
Henry Schreiner
f0a65c899c
docs(fix): spelling mistake in recent commit 2021-07-12 16:57:28 -04:00
Ralf W. Grosse-Kunstleve
7472d37a93
Adding iostream.h thread-safety documentation. (#2995)
* Adding iostream.h thread-safety documentation.

* Restoring `TestThread` code with added `std::lock_guard<std::mutex>`.

* Updating new comments to reflect new information.

* Fixing up `git rebase -X theirs` accidents.
2021-07-12 13:39:06 -07:00