Commit Graph

3199 Commits

Author SHA1 Message Date
Pablo Speciale
0cbd92bab8
Update pytest to version 7.2.0 (which removes their dependency on py) (#4880)
* Update pytest (which removes their dependency on py)

The py library through 1.11.0 for Python allows remote attackers to conduct a ReDoS (Regular expression Denial of Service) attack via a Subversion repository with crafted info data, because the InfoSvnCommand argument is mishandled.

The particular codepath in question is the regular expression at py._path.svnurl.InfoSvnCommand.lspattern and is only relevant when dealing with subversion (svn) projects. Notably the codepath is not used in the popular pytest project. The developers of the pytest package have released version 7.2.0 which removes their dependency on py. Users of pytest seeing alerts relating to this advisory may update to version 7.2.0 of pytest to resolve this issue. See https://github.com/pytest-dev/py/issues/287#issuecomment-1290407715 for additional context.

* Added conditions so that we keep using 7.0.0 on python 3.6
2023-10-16 07:42:30 -07:00
Steve R. Sun
4ab72ba534
Merge branch 'pybind:master' into master 2023-10-14 17:25:09 +08:00
Ralf W. Grosse-Kunstleve
0e2c3e5db4
Add pybind11/gil_safe_call_once.h (to fix deadlocks in pybind11/numpy.h) (#4877)
* LazyInitializeAtLeastOnceDestroyNever v1

* Go back to using `union` as originally suggested by jbms@. The trick (also suggested by jbms@) is to add empty ctor + dtor.

* Revert "Go back to using `union` as originally suggested by jbms@. The trick (also suggested by jbms@) is to add empty ctor + dtor."

This reverts commit e7b8c4f0fc.

* Remove `#include <stdalign.h>`

* `include\pybind11/numpy.h(24,10): fatal error C1083: Cannot open include file: 'stdalign.h': No such file or directory`

* @tkoeppe wrote: this is a C interop header (and we're not writing C)

* Suppress gcc 4.8.5 (CentOS 7) warning.

```
include/pybind11/eigen/../numpy.h:63:53: error: dereferencing type-punned pointer will break strict-aliasing rules [-Werror=strict-aliasing]
         return *reinterpret_cast<T *>(value_storage_);
                                                     ^
```

* Replace comments:

Document PRECONDITION.

Adopt comment suggested by @tkoeppe: https://github.com/pybind/pybind11/pull/4877#discussion_r1350356093

* Adopt suggestion by @tkoeppe:

* https://github.com/pybind/pybind11/pull/4877#issuecomment-1752969127

* https://godbolt.org/z/Wa79nKz6e

* Add `PYBIND11_CONSTINIT`, but it does not work for the current use cases:

```
g++ -o pybind11/tests/test_numpy_array.os -c -std=c++20 -fPIC -fvisibility=hidden -O0 -g -Wall -Wextra -Wconversion -Wcast-qual -Wdeprecated -Wundef -Wnon-virtual-dtor -Wunused-result -Werror -isystem /usr/include/python3.11 -isystem /usr/include/eigen3 -DPYBIND11_STRICT_ASSERTS_CLASS_HOLDER_VS_TYPE_CASTER_MIX -DPYBIND11_ENABLE_TYPE_CASTER_ODR_GUARD_IF_AVAILABLE -DPYBIND11_TEST_BOOST -Ipybind11/include -I/usr/local/google/home/rwgk/forked/pybind11/include -I/usr/local/google/home/rwgk/clone/pybind11/include /usr/local/google/home/rwgk/forked/pybind11/tests/test_numpy_array.cpp
```

```
In file included from /usr/local/google/home/rwgk/forked/pybind11/tests/test_numpy_array.cpp:10:
/usr/local/google/home/rwgk/forked/pybind11/include/pybind11/numpy.h: In static member function ‘static pybind11::detail::npy_api& pybind11::detail::npy_api::get()’:
/usr/local/google/home/rwgk/forked/pybind11/include/pybind11/numpy.h:258:82: error: ‘constinit’ variable ‘api_init’ does not have a constant initializer
  258 |         PYBIND11_CONSTINIT static LazyInitializeAtLeastOnceDestroyNever<npy_api> api_init;
      |                                                                                  ^~~~~~~~
```

```
In file included from /usr/local/google/home/rwgk/forked/pybind11/tests/test_numpy_array.cpp:10:
/usr/local/google/home/rwgk/forked/pybind11/include/pybind11/numpy.h: In static member function ‘static pybind11::object& pybind11::dtype::_dtype_from_pep3118()’:
/usr/local/google/home/rwgk/forked/pybind11/include/pybind11/numpy.h:697:13: error: ‘constinit’ variable ‘imported_obj’ does not have a constant initializer
  697 |             imported_obj;
      |             ^~~~~~~~~~~~
```

* Revert "Add `PYBIND11_CONSTINIT`, but it does not work for the current use cases:"

This reverts commit f07b28bda9.

* Reapply "Add `PYBIND11_CONSTINIT`, but it does not work for the current use cases:"

This reverts commit 36be645758.

* Add Default Member Initializer on `value_storage_` as suggested by @tkoeppe:

https://github.com/pybind/pybind11/pull/4877#issuecomment-1753201342

This fixes the errors reported under commit f07b28bda9.

* Fix copy-paste-missed-a-change mishap in commit 88cec1152a.

* Semi-paranoid placement new (based on https://github.com/pybind/pybind11/pull/4877#discussion_r1350573114).

* Move PYBIND11_CONSTINIT to detail/common.h

* Move code to the right places, rename new class and some variables.

* Fix oversight: update tests/extra_python_package/test_files.py

* Get the name right first.

* Use `std::call_once`, `std::atomic`, following a pattern developed by @tkoeppe

* Make the API more self-documenting (and possibly more easily reusable).

* google-clang-tidy IWYU fixes

* Rewrite comment as suggested by @tkoeppe

* Update test_exceptions.cpp and exceptions.rst

* Fix oversight in previous commit: add `PYBIND11_CONSTINIT`

* Make `get_stored()` non-const for simplicity.

As suggested by @tkoeppe: not seeing any reasonable use in which `get_stored` has to be const.

* Add comment regarding `KeyboardInterrupt` behavior, based heavily on information provided by @jbms.

* Add `assert(PyGILState_Check())` in `gil_scoped_release` ctor (simple & non-simple implementation) as suggested by @EthanSteinberg.

* Fix oversight in previous commit (missing include cassert).

* Remove use of std::atomic, leaving comments with rationale, why it is not needed.

* Rewrite comment re `std:optional` based on deeper reflection (aka 2nd thoughts).

* Additional comment with the conclusion of a discussion under PR #4877.

* https://github.com/pybind/pybind11/pull/4877#issuecomment-1757363179

* Small comment changes suggested by @tkoeppe.
2023-10-11 21:05:31 -07:00
Steve R. Sun
2eb545ffd3
Merge branch 'pybind:master' into master 2023-10-07 11:49:44 +08:00
dependabot[bot]
6c77208561
chore(deps): bump seanmiddleditch/gha-setup-ninja from 3 to 4 (#4875)
Bumps [seanmiddleditch/gha-setup-ninja](https://github.com/seanmiddleditch/gha-setup-ninja) from 3 to 4.
- [Release notes](https://github.com/seanmiddleditch/gha-setup-ninja/releases)
- [Commits](https://github.com/seanmiddleditch/gha-setup-ninja/compare/v3...v4)

---
updated-dependencies:
- dependency-name: seanmiddleditch/gha-setup-ninja
  dependency-type: direct:production
  update-type: version-update:semver-major
...

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2023-10-05 21:21:22 -07:00
Steve R. Sun
140463af93
Merge branch 'pybind:master' into master 2023-10-05 16:05:32 +08:00
pre-commit-ci[bot]
2b2e4ca4a3
chore(deps): update pre-commit hooks (#4868)
* chore(deps): update pre-commit hooks

updates:
- [github.com/psf/black-pre-commit-mirror: 23.7.0 → 23.9.1](https://github.com/psf/black-pre-commit-mirror/compare/23.7.0...23.9.1)
- [github.com/astral-sh/ruff-pre-commit: v0.0.287 → v0.0.292](https://github.com/astral-sh/ruff-pre-commit/compare/v0.0.287...v0.0.292)
- [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](https://github.com/codespell-project/codespell/compare/v2.2.5...v2.2.6)
- [github.com/shellcheck-py/shellcheck-py: v0.9.0.5 → v0.9.0.6](https://github.com/shellcheck-py/shellcheck-py/compare/v0.9.0.5...v0.9.0.6)
- [github.com/PyCQA/pylint: v3.0.0a7 → v3.0.0](https://github.com/PyCQA/pylint/compare/v3.0.0a7...v3.0.0)

* Update .pre-commit-config.yaml

* style: pre-commit fixes

* Update .pre-commit-config.yaml

---------

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2023-10-03 13:13:44 -04:00
Mateusz Sokół
dd64df73c3
MAINT: Remove np.int_ (#4867) 2023-10-03 09:12:58 -07:00
Steve R. Sun
eebdc434af
Merge branch 'pybind:master' into master 2023-09-28 11:14:28 +08:00
Mateusz Sokół
0a756c0bb2
MAINT: Include numpy._core imports (#4857)
* MAINT: Include numpy._core imports

* style: pre-commit fixes

* Apply review comments

* style: pre-commit fixes

* Add no-inline attribute

* Select submodule name based on numpy version

* style: pre-commit fixes

* Update pre-commit check

* Add error_already_set and simplify if statement

* Update .pre-commit-config.yaml

Co-authored-by: Ralf W. Grosse-Kunstleve <rwgkio@gmail.com>

---------

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2023-09-27 10:22:04 -07:00
Ralf W. Grosse-Kunstleve
f468b0707e
Add 2 missing throw error_already_set(); (#4863)
Fixes oversights in PR #4570.
2023-09-27 09:55:49 -07:00
Steve R. Sun
df86c5dfc6
Merge branch 'pybind:master' into master 2023-09-26 11:24:28 +08:00
Oleksandr Pavlyk
7e5edbc947
Avoid copy in iteration by using const auto & (#4861)
This change is fixing a Coverity AUTO_CAUSES_COPY issues.
2023-09-25 08:38:21 -07:00
Steve R. Sun
46697711b3
Merge branch 'pybind:master' into master 2023-09-18 11:54:11 +08:00
László Papp
5891867ee4
fix(cmake): support DEBUG_POSTFIX correctly (#4761)
* cmake: split extension

Into suffix and debug postfix. Pybind11 is currently treating both as
suffix, which is problematic when something else defines the
DEBUG_POSTFIX because they will be concatenated.

pybind11_extension sets SUFFIX to _d.something and if DEBUG_POSTFIX is
set to _d.

    _d + _d.something = _d_d.something

The issue has been reported at:

https://github.com/pybind/pybind11/issues/4699

* style: pre-commit fixes

* fix(cmake): support postfix for old FindPythonInterp mode too

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

---------

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Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2023-09-15 18:05:43 -04:00
Henry Schreiner
4fb111bd78
fix(cmake): correctly detect FindPython policy and better warning (#4806) 2023-09-15 17:59:30 -04:00
Steve R. Sun
41e182b553
Merge branch 'pybind:master' into master 2023-09-15 10:39:52 +08:00
Ralf W. Grosse-Kunstleve
d06d53694a
Fix small bug introduced with PR #4735 (#4845)
* Bug fix: `result[0]` called if `result.empty()`

* Add unit test that fails without the fix.
2023-09-14 09:47:34 -07:00
Steve R. Sun
ae96fd6526
Merge branch 'pybind:master' into master 2023-09-13 08:17:51 +08:00
Sergei Izmailov
8c7b8dd0ae
fix: Missing typed variants of iterator and iterable (#4832) 2023-09-12 12:48:27 -07:00
Sergei Izmailov
b4573674bc
Update render for buffer sequence and handle (#4831)
* fix: Add capitalize render name of `py::buffer` and `py::sequence`

* fix: Render `py::handle` same way as `py::object`

* tests: Fix tests `handle` -> `object`

* tests: Test capitaliation of `py::sequence` and `py::buffer`

* style: pre-commit fixes

* fix: Render `py::object` as `Any`

* Revert "fix: Render `py::object` as `Any`"

This reverts commit 7861dcfabb.

---------

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2023-09-12 12:47:39 -07:00
Sergei Izmailov
c9149d995c
fix: Use lowercase builtin collection names (#4833) 2023-09-12 12:46:58 -07:00
Steve R. Sun
b16f121910
Merge branch 'pybind:master' into master 2023-09-08 07:47:03 +08:00
Sergei Izmailov
c83605936b
feature: Support move-only iterators in py::make_*iterator (#4834)
* feature: Support move-only iterators in `py::make_*iterator`

* fix: Missing static assertion message

* fixup: Missing `explicit` in single argument constructors

* fix: Simplify tests: make existing iterator move-only

* fix: Missing `noexcept`
2023-09-07 05:57:39 -07:00
pre-commit-ci[bot]
15ff9f48f7 style: pre-commit fixes 2023-09-06 23:54:17 +00:00
Steve R. Sun
e9306bdf67
Merge branch 'pybind:master' into master 2023-09-07 07:53:56 +08:00
dependabot[bot]
4a2f7e4681
chore(deps): bump actions/checkout from 1 to 4 (#4836)
* chore(deps): bump actions/checkout from 1 to 4

Bumps [actions/checkout](https://github.com/actions/checkout) from 1 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v1...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

* Update .github/workflows/ci.yml

* actions/checkout@v1 for centos:7

* Fix oversight: centos:7 actually works with actions/checkout@v3

---------

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2023-09-06 15:57:18 -04:00
pre-commit-ci[bot]
467fe27bd9
chore(deps): update pre-commit hooks (#4838)
* chore(deps): update pre-commit hooks

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.0.281 → v0.0.287](https://github.com/astral-sh/ruff-pre-commit/compare/v0.0.281...v0.0.287)
- [github.com/pre-commit/mirrors-mypy: v1.4.1 → v1.5.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.4.1...v1.5.1)
- [github.com/asottile/blacken-docs: 1.15.0 → 1.16.0](https://github.com/asottile/blacken-docs/compare/1.15.0...1.16.0)
- [github.com/Lucas-C/pre-commit-hooks: v1.5.1 → v1.5.4](https://github.com/Lucas-C/pre-commit-hooks/compare/v1.5.1...v1.5.4)
- [github.com/PyCQA/pylint: v3.0.0a6 → v3.0.0a7](https://github.com/PyCQA/pylint/compare/v3.0.0a6...v3.0.0a7)

* style: pre-commit fixes

* Update pyproject.toml

---------

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Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
2023-09-06 06:04:27 -07:00
Steve R. Sun
366591a8d3
Merge branch 'pybind:master' into master 2023-09-02 08:56:30 +08:00
Ralf W. Grosse-Kunstleve
c9638a1927
Help Coverty avoid generating a false positive. (#4817)
* Change variable name `it` to `curr_overl` to improve readability, add `assert()` in the only place where `curr_overl` could become `nullptr`.

* Move the `assert()` to where Coverty generates a false positive.

* variable name as suggested by @henryiii
2023-09-01 11:31:22 -07:00
Steve R. Sun
38d23b9137
Merge branch 'pybind:master' into master 2023-09-01 07:54:51 +08:00
Sergei Izmailov
db412e6e86
fix: Render py::function as Callable (#4829)
* fix: Render `py::function` as `Callable`

* style: pre-commit fixes

---------

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2023-08-30 22:43:01 -07:00
Steve R. Sun
ab96a975a9
Merge branch 'pybind:master' into master 2023-08-31 07:34:18 +08:00
Sergei Izmailov
e705fb5f27
Fix enum's __str__ docstring (#4827)
* fix: Enum __str__ function name

* tests: Test enum.__str__.__doc__
2023-08-30 14:20:46 -07:00
Ralf W. Grosse-Kunstleve
1adac5a5b1
PYBIND11_INTERNALS_VERSION bump for MSVC, piggy-backed on PR #4779. See comments there. (#4819) 2023-08-30 10:05:24 -07:00
Steve R. Sun
6b905e5e8d
Merge branch 'pybind:master' into master 2023-08-24 07:49:43 +08:00
Peter Würtz
76b8858110
fix: Different MSVC versions may be ABI incompatible, guard with _MSC_VER (#2898) (#4779) 2023-08-23 09:49:35 -07:00
Steve R. Sun
a6c8bbf36b
Merge branch 'pybind:master' into master 2023-08-16 11:04:27 +08:00
Jean Elsner
b9359ceadb
Remove newlines from docstring signature (#4735)
* Remove newlines from docstring signature

* Jean/dev (#1)

Replace newlines in arg values with spaces

* style: pre-commit fixes

* Don't use std::find_if for C++ 11 compatibility

* Avoid implicit char to bool conversion

* Test default arguments for line breaks

* style: pre-commit fixes

* Separate Eigen tests

* style: pre-commit fixes

* Fix merge

* Try importing numpy

* Avoid unreferenced variable in catch block

* style: pre-commit fixes

* Update squash function

* Reduce try block

* Additional test cases

* style: pre-commit fixes

* Put statement inside braces

* Move string into function body

* Rename repr for better readability. Make constr explicit.

* Add multiline string default argument test case

* style: pre-commit fixes

* Add std namespace, do not modify string repr

* Test for all space chars, test str repr not modified

---------

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2023-08-15 07:48:59 -07:00
Kenji
f47ff3280e
Fix grammar in functions.rst (#4791)
The previous sentence had an extra "a" before "several", which isn't right.
2023-08-15 07:09:13 -07:00
Ralf W. Grosse-Kunstleve
80bcd21fb7
[ci skip] Adopt nanobind config. (#4792) 2023-08-15 07:02:54 -07:00
Ralf W. Grosse-Kunstleve
add281a2da
Migrate to readthedocs configuration file v2¶ (#4789)
* Copy of recommded readthedocs configuration file v2

* [ci skip] It is now requirements (not requirements_file)
2023-08-14 21:46:17 -07:00
Steve R. Sun
88430cbb93
Merge branch 'pybind:master' into master 2023-08-11 15:03:33 +08:00
Henry Schreiner
9039e6ac42
chore: use 2x faster black mirror (#4784)
Committed via https://github.com/asottile/all-repos
2023-08-10 15:17:56 -04:00
Steve R. Sun
c9039475be
Merge branch 'pybind:master' into master 2023-08-09 18:51:58 +08:00
Pieter P
4bf60c609a
Disable strip when build type is unset (#4454) (#4780) 2023-08-07 20:58:30 -07:00
Ralf W. Grosse-Kunstleve
690a115d84
Add py::set_error(), use in updated py::exception<> documentation (#4772)
* Copy clang 17 compatibility fixes from PR #4762 to a separate PR.

* static py::exception<> -> static py::handle

* Add `py::set_error()` but also try the suggestion of @malfet (https://github.com/pytorch/pytorch/pull/106401#pullrequestreview-1559961407).

* clang 17 compatibility fixes (#4767)

* Copy clang 17 compatibility fixes from PR #4762 to a separate PR.

* Add gcc:13 C++20

* Add silkeh/clang:16-bullseye C++20

* chore(deps): update pre-commit hooks (#4770)

updates:
- [github.com/psf/black: 23.3.0 → 23.7.0](https://github.com/psf/black/compare/23.3.0...23.7.0)
- [github.com/astral-sh/ruff-pre-commit: v0.0.276 → v0.0.281](https://github.com/astral-sh/ruff-pre-commit/compare/v0.0.276...v0.0.281)
- [github.com/asottile/blacken-docs: 1.14.0 → 1.15.0](https://github.com/asottile/blacken-docs/compare/1.14.0...1.15.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* docs: Remove upper bound on pybind11 in example pyproject.toml for setuptools (#4774)

* docs: Remove upper bound on pybind11 in example pyproject.toml for setuptools

* Update docs/compiling.rst

---------

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* Provide better type hints for a variety of generic types (#4259)

* Provide better type hints for a variety of generic types

* Makes better documentation
* tuple, dict, list, set, function

* Move to py::typing

* style: pre-commit fixes

* Update copyright line with correct year and actual author. The author information was copy-pasted from the git log output.

---------

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Use `py::set_error()` everywhere possible (only one special case, in common.h).
Overload `py::set_error(py::handle, py::handle)`.
Change back to `static py::handle exc = ... .release();`
Deprecate `py::exception<>::operator()`

* Add `PYBIND11_WARNING_DISABLE` for INTEL and MSVC (and sort alphabetically).

* `PYBIND11_WARNING_DISABLE_INTEL(10441)` does not work.

For ICC only, falling back to the recommended `py::set_error()` to keep the testing simple.

It is troublesome to add `--diag-disable=10441` specifically for test_exceptions.cpp, even that is non-ideal because it covers the entire file, not just the one line we need it for, and the value of exercising the trivial deprecated `operator()` on this one extra platform is practically zero.

* Fix silly oversight.

* NVHPC 23.5.0 generates deprecation warnings. They are currently not treated as errors, but falling back to using `py::set_error()` to not have to deal with that distraction.

---------

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2023-08-07 20:48:20 -07:00
Steve R. Sun
e7086add6c
Merge branch 'pybind:master' into master 2023-08-07 08:31:56 +08:00
Axel Huebl
824dc27a01
CI: Reenable an NVHPC Test (#4764)
Update from CentOS to Ubuntu and to a recent version
of NVHPC (former: PGI).

Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
2023-08-04 11:17:33 -07:00
Dustin Spicuzza
f8703154ec
Provide better type hints for a variety of generic types (#4259)
* Provide better type hints for a variety of generic types

* Makes better documentation
* tuple, dict, list, set, function

* Move to py::typing

* style: pre-commit fixes

* Update copyright line with correct year and actual author. The author information was copy-pasted from the git log output.

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Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2023-08-03 22:48:57 -07:00