Commit Graph

24 Commits

Author SHA1 Message Date
pre-commit-ci[bot]
f33f6afb66
chore(deps): update pre-commit hooks (#5084)
* chore(deps): update pre-commit hooks

updates:
- [github.com/pre-commit/mirrors-clang-format: v17.0.6 → v18.1.2](https://github.com/pre-commit/mirrors-clang-format/compare/v17.0.6...v18.1.2)
- [github.com/astral-sh/ruff-pre-commit: v0.2.0 → v0.3.5](https://github.com/astral-sh/ruff-pre-commit/compare/v0.2.0...v0.3.5)
- [github.com/pre-commit/mirrors-mypy: v1.8.0 → v1.9.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.8.0...v1.9.0)
- [github.com/Lucas-C/pre-commit-hooks: v1.5.4 → v1.5.5](https://github.com/Lucas-C/pre-commit-hooks/compare/v1.5.4...v1.5.5)
- [github.com/sirosen/texthooks: 0.6.4 → 0.6.6](https://github.com/sirosen/texthooks/compare/0.6.4...0.6.6)
- [github.com/shellcheck-py/shellcheck-py: v0.9.0.6 → v0.10.0.1](https://github.com/shellcheck-py/shellcheck-py/compare/v0.9.0.6...v0.10.0.1)
- [github.com/PyCQA/pylint: v3.0.3 → v3.1.0](https://github.com/PyCQA/pylint/compare/v3.0.3...v3.1.0)
- [github.com/python-jsonschema/check-jsonschema: 0.28.0 → 0.28.1](https://github.com/python-jsonschema/check-jsonschema/compare/0.28.0...0.28.1)

* style: pre-commit fixes

* fix(types): correction for better typing

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

---------

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2024-04-02 11:14:08 -04:00
Ralf W. Grosse-Kunstleve
8e1f9d5c40
Add format_descriptor<> & npy_format_descriptor<> PyObject * specializations. (#4674)
* Add `npy_format_descriptor<PyObject *>` to enable `py::array_t<PyObject *>` to/from-python conversions.

* resolve clang-tidy warning

* Use existing constructor instead of adding a static method. Thanks @Skylion007 for pointing out.

* Add `format_descriptor<PyObject *>`

Trivial addition, but still in search for a meaningful test.

* Add test_format_descriptor_format

* Ensure the Eigen `type_caster`s do not segfault when loading arrays with dtype=object

* Use `static_assert()` `!std::is_pointer<>` to replace runtime guards.

* Add comments to explain how to check for ref-count bugs. (NO code changes.)

* Make the "Pointer types ... are not supported" message Eigen-specific, as suggested by @Lalaland. Move to new pybind11/eigen/common.h header.

* Change "format_descriptor_format" implementation as suggested by @Lalaland. Additional tests meant to ensure consistency between py::format_descriptor<>, np.array, np.format_parser turn out to be useful only to highlight long-standing inconsistencies.

* resolve clang-tidy warning

* Account for np.float128, np.complex256 not being available on Windows, in a future-proof way.

* Fully address i|q|l ambiguity (hopefully).

* Remove the new `np.format_parser()`-based test, it's much more distracting than useful.

* Use bi.itemsize to disambiguate "l" or "L"

* Use `py::detail::compare_buffer_info<T>::compare()` to validate the `format_descriptor<T>::format()` strings.

* Add `buffer_info::compare<T>` to make `detail::compare_buffer_info<T>::compare` more visible & accessible.

* silence clang-tidy warning

* pytest-compatible access to np.float128, np.complex256

* Revert "pytest-compatible access to np.float128, np.complex256"

This reverts commit e9a289c50f.

* Use `sizeof(long double) == sizeof(double)` instead of `std::is_same<>`

* Report skipped `long double` tests.

* Change the name of the new `buffer_info` member function to `item_type_is_equivalent_to`. Add comment defining "equivalent" by example.

* Change `item_type_is_equivalent_to<>()` from `static` function to member function, as suggested by @Lalaland
2023-05-23 10:49:32 -07:00
Ralf W. Grosse-Kunstleve
ec24786eab
Fully-automatic clang-format with include reordering (#3713)
* chore: add clang-format

* Removing check-style (Classic check-style)

Ported from @henryiii's 53056b1b0e

* Automatic clang-format changes (NO manual changes).

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2022-02-10 12:17:07 -08:00
Ralf W. Grosse-Kunstleve
e96221beff
Final manual curation in preparation for global clang-formating (#3712)
* Manual line breaks to pre-empt undesired `clang-format`ing.

Informed by work under https://github.com/pybind/pybind11/pull/3683:

60b7eb410f

59572e6559

* Manual curation of clang-format diffs involving source code comments.

Very labor-intensive and dull.

* Pulling .clang-format change from @henryiii's 9057962d40

* Adding commonly used .clang-format `CommentPragmas:`

* Ensure short lambdas are allowed

Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
2022-02-10 11:42:03 -08:00
Aaron Gokaslan
d6c66d25bb
chore(clang-tidy): Add clang-tidy rules: prefer-member-initializer and optin.performance.Padding (#3716)
* Add clang-tidy prefer-member-initializer

* Fix clang-tdy config

* Fix incorrect change

* Fix sorting of .clang-tidy
2022-02-10 09:45:46 -08:00
Ralf W. Grosse-Kunstleve
ddbc74c674 Adding .clang-tidy readability-braces-around-statements option.
clang-tidy automatic changes. NO manual changes.
2022-02-08 13:02:20 -08:00
Ralf W. Grosse-Kunstleve
e93d94594b
Removing MSVC C4800 from pragma block at the top of pybind11.h (#3141)
* Adding PYBIND11_COMPAT_BOOL_CAST to appease MSVC 2015 warning C4800.

* Replacing PYBIND11_COMPAT_BOOL_CAST with simpler != 0

* Extra parentheses (almost all compilers failed without these).
2021-07-28 21:49:09 -04:00
Aaron Gokaslan
af6218ff78
fix(clang-tidy): Apply performance fixes from clang-tidy (#3046)
* Apply performance fixes from clang-tidy

* 2nd Round of Perf Optimizations

* 3rd round of fixes & handle false-positive

* Apply missing fix and clang-format

* Apply reviewer comment
2021-06-19 10:53:27 -07:00
Fritz Reese
e8ad33bb30
Fix buffer_info for ctypes buffers (pybind#2502) (#2503)
* tests: New test for ctypes buffers (pybind#2502)

* fix: fix buffer_info segfault on views with no stride (pybind11#2502)

* Explicit conversions in buffer_info to make clang happy (pybind#2502)

* Another explicit cast in buffer_info constructor for clang (pybind#2502)

* Simpler implementation of buffer_info constructor from Py_buffer.

* Move test_ctypes_buffer into test_buffers

* Comment on why view->strides may be NULL (and fix some whitespace)

* Use c_strides() instead of zero when view->strides is NULL.

c_strides and f_strides are moved from numpy.h (py::array)
to buffer_info.h (py::detail) so they can be used from the
buffer_info Py_buffer constructor.

* Increase ctypes buffer test coverage in test_buffers.

* Split ctypes tests and skip one which is broken in PyPy2.
2020-10-03 23:09:14 +02:00
Henry Schreiner
b491b465c7 style: clang-tidy: modernize-use-equals-default 2020-09-15 09:56:59 -04:00
Kota Yamaguchi
e248869893
Fix undefined memoryview format (#2223)
* Fix undefined memoryview format

* Add missing <algorithm> header

* Add workaround for py27 array compatibility

* Workaround py27 memoryview behavior

* Fix memoryview constructor from buffer_info

* Workaround PyMemoryView_FromMemory availability in py27

* Fix up memoryview tests

* Update memoryview test from buffer to check signedness

* Use static factory method to create memoryview

* Remove ndim arg from memoryview::frombuffer and add tests

* Allow ndim=0 memoryview and documentation fixup

* Use void* to align to frombuffer method signature

* Add const variants of frombuffer and frommemory

* Add memory view section in doc

* Fix docs

* Add test for null buffer

* Workaround py27 nullptr behavior in test

* Rename frombuffer to from_buffer
2020-07-15 08:50:43 -07:00
Yannick Jadoul
f980d76d38
Change NAMESPACE_* macros into PYBIND11_NAMESPACE_* (#2283)
* Change NAMESPACE_BEGIN and NAMESPACE_END macros into PYBIND11_NAMESPACE_BEGIN and PYBIND11_NAMESPACE_END

* Fix sudden HomeBrew 'python not installed' error

* Sweep difference in 'Class.__init__() must be called when overriding __init__' error message between CPython and PyPy under the rug

* Homebrew updated to 3.8 yesterday.

Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
2020-07-08 18:14:41 -04:00
Sebastian Koslowski
dc65d66171 support for readonly buffers (#863) (#1466) 2019-11-24 08:33:05 +01:00
Riccardo Bertossa
6c29cbf88d misleading comment corrected (strides in buffer_info is bytes and not number of entries) (#1958) 2019-10-18 17:55:17 +02:00
Dean Moldovan
f580649871 Move internal headers into detail subdirectory 2017-08-17 04:06:35 +02:00
Jason Rhinelander
a859dd67a2 Force hidden visibility on pybind code
This adds a PYBIND11_NAMESPACE macro that expands to the `pybind11`
namespace with hidden visibility under gcc-type compilers, and otherwise
to the plain `pybind11`.  This then forces hidden visibility on
everything in pybind, solving the visibility issues discussed at end
end of #949.
2017-08-14 11:40:38 -04:00
Yannick Jadoul
b700c5d672 Convenience constructor templates for buffer_info (#860)
* Added template constructors to buffer_info that can deduce the item size, format string, and number of dimensions from the pointer type and the shape container

* Implemented actual buffer_info constructor as private delegate constructor taking rvalue reference as a workaround for the evaluation order move problem on GCC 4.8
2017-05-29 03:13:55 +02:00
Cris Luengo
30d43c4992 Now shape, size, ndims and itemsize are also signed integers. 2017-05-08 01:50:21 +02:00
Jason Rhinelander
b68959e822 Use numpy rather than Eigen for copying
We're current copy by creating an Eigen::Map into the input numpy
array, then assigning that to the basic eigen type, effectively having
Eigen do the copy.  That doesn't work for negative strides, though:
Eigen doesn't allow them.

This commit makes numpy do the copying instead by allocating the eigen
type, then having numpy copy from the input array into a numpy reference
into the eigen object's data.  This also saves a copy when type
conversion is required: numpy can do the conversion on-the-fly as part
of the copy.

Finally this commit also makes non-reference parameters respect the
convert flag, declining the load when called in a noconvert pass with a
convertible, but non-array input or an array with the wrong dtype.
2017-05-08 01:50:21 +02:00
Jason Rhinelander
51d18aa252 Fix ambiguous initialize_list arguments
This removes the convert-from-arithemtic-scalar constructor of
any_container as it can result in ambiguous calls, as in:

    py::array_t<float>({ 1, 2 })

which could be intepreted as either of:

    py::array_t<float>(py::array_t<float>(1, 2))
    py::array_t<float>(py::detail::any_container({ 1, 2 }))

Removing the convert-from-arithmetic constructor reduces the number of
implicit conversions, avoiding the ambiguity for array and array_t.
This also re-adds the array/array_t constructors taking a scalar
argument for backwards compatibility.
2017-04-28 14:12:06 -04:00
Jason Rhinelander
02ffbf16fe Fix PyBuffer_Release leak
5f38386293 accidentally dropped setting
buffer_info.view, resulting in the buffer never being released (because
view was always nullptr).
2017-04-14 13:57:49 -04:00
Jason Rhinelander
201796d94f Make any_container implicitly constructible from arithmetic values
This further reduces the constructors required in buffer_info/numpy by
removing the need for the constructors that take a single size_t and
just forward it on via an initializer_list to the container-accepting
constructor.

Unfortunately, in `array` one of the constructors runs into an ambiguity
problem with the deprecated `array(handle, bool)` constructor (because
both the bool constructor and the any_container constructor involve an
implicit conversion, so neither has precedence), so a forwarding
constructor is kept there (until the deprecated constructor is
eventually removed).
2017-04-13 09:57:02 -04:00
Jason Rhinelander
5f38386293 Accept abitrary containers and iterators for shape/strides
This adds support for constructing `buffer_info` and `array`s using
arbitrary containers or iterator pairs instead of requiring a vector.

This is primarily needed by PR #782 (which makes strides signed to
properly support negative strides, and will likely also make shape and
itemsize to avoid mixed integer issues), but also needs to preserve
backwards compatibility with 2.1 and earlier which accepts the strides
parameter as a vector of size_t's.

Rather than adding nearly duplicate constructors for each stride-taking
constructor, it seems nicer to simply allow any type of container (or
iterator pairs).  This works by replacing the existing vector arguments
with a new `detail::any_container` class that handles implicit
conversion of arbitrary containers into a vector of the desired type.
It can also be explicitly instantiated with a pair of iterators (e.g.
by passing {begin, end} instead of the container).
2017-04-13 09:57:02 -04:00
Jason Rhinelander
dbb4c5b531 Move buffer_info to its own header
Upcoming changes to buffer_info make it need some things declared in
common.h; it also feels a bit misplaced in common.h (which is arguably
too large already), so move it out.  (Separating this and the subsequent
changes into separate commits to make the changes easier to distinguish
from the move.)
2017-04-13 09:57:02 -04:00