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95 Commits

Author SHA1 Message Date
Ralf W. Grosse-Kunstleve
d5125eaf1e Merge branch 'master' into sh_merge_master 2022-05-05 16:12:58 -07:00
pre-commit-ci[bot]
9a16e55ad2
[pre-commit.ci] pre-commit autoupdate (#3903) 
updates:
- [github.com/hadialqattan/pycln: v1.3.1 → v1.3.2](https://github.com/hadialqattan/pycln/compare/v1.3.1...v1.3.2)
- [github.com/PyCQA/pylint: v2.13.5 → v2.13.8](https://github.com/PyCQA/pylint/compare/v2.13.5...v2.13.8)
- [github.com/pre-commit/mirrors-mypy: v0.942 → v0.950](https://github.com/pre-commit/mirrors-mypy/compare/v0.942...v0.950)
 2022-05-05 15:02:16 -04:00
Ralf W. Grosse-Kunstleve
2ee1e6445d Merge branch 'master' into sh_merge_master 2022-05-02 12:41:48 -07:00
pre-commit-ci[bot]
e8e229fa0b
[pre-commit.ci] pre-commit autoupdate (#3885) 
updates:
- [github.com/hadialqattan/pycln: v1.2.5 → v1.3.1](https://github.com/hadialqattan/pycln/compare/v1.2.5...v1.3.1)
- [github.com/pre-commit/mirrors-clang-format: v13.0.1 → v14.0.1](https://github.com/pre-commit/mirrors-clang-format/compare/v13.0.1...v14.0.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-04-18 17:44:01 -04:00
Ralf W. Grosse-Kunstleve
ab41fa281c Merge branch 'master' into sh_merge_master 2022-04-12 15:48:59 -07:00
pre-commit-ci[bot]
ad0de0f5a6
[pre-commit.ci] pre-commit autoupdate (#3863) 
updates:
- [github.com/pre-commit/pre-commit-hooks: v4.1.0 → v4.2.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.1.0...v4.2.0)
- [github.com/asottile/pyupgrade: v2.31.1 → v2.32.0](https://github.com/asottile/pyupgrade/compare/v2.31.1...v2.32.0)
- [github.com/PyCQA/pylint: v2.13.4 → v2.13.5](https://github.com/PyCQA/pylint/compare/v2.13.4...v2.13.5)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-04-11 19:50:42 -04:00
Henry Schreiner
9969f3b5b5
ci: drop win2016 (#3854) 
* ci: drop dead windows CI jobs

* chore: touch up pre-commit

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

* Update configure.yml

* Update configure.yml
 2022-04-11 16:54:33 -04:00
pre-commit-ci[bot]
f2f0c69096
[pre-commit.ci] pre-commit autoupdate (#3848) 
updates:
- [github.com/PyCQA/pylint: v2.13.2 → v2.13.4](https://github.com/PyCQA/pylint/compare/v2.13.2...v2.13.4)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-04-04 17:56:42 -04:00
Ralf W. Grosse-Kunstleve
4db19272cb Merge branch 'master' into sh_merge_master 2022-03-30 19:33:07 -07:00
Henry Schreiner
42d8593ad4
style: bump black (#3831) 
* style: bump black

Signed-off-by: Henry Schreiner <henryschreineriii@gmail.com>

* fix: pycln broken by typer breakage
 2022-03-28 17:24:59 -04:00
Ralf W. Grosse-Kunstleve
08ea85b0ac Merge branch 'master' into sh_merge_master 2022-03-21 22:59:39 -07:00
pre-commit-ci[bot]
67089cd3e6
[pre-commit.ci] pre-commit autoupdate (#3817) 
updates:
- [github.com/pre-commit/mirrors-mypy: v0.940 → v0.941](https://github.com/pre-commit/mirrors-mypy/compare/v0.940...v0.941)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-03-21 20:47:02 -04:00
pre-commit-ci[bot]
ed1407372d [pre-commit.ci] pre-commit autoupdate (#3800) 
updates:
- [github.com/asottile/pyupgrade: v2.31.0 → v2.31.1](https://github.com/asottile/pyupgrade/compare/v2.31.0...v2.31.1)
- [github.com/sirosen/texthooks: 0.2.2 → 0.3.1](https://github.com/sirosen/texthooks/compare/0.2.2...0.3.1)
- [github.com/hadialqattan/pycln: v1.2.4 → v1.2.5](https://github.com/hadialqattan/pycln/compare/v1.2.4...v1.2.5)
- [github.com/pre-commit/mirrors-mypy: v0.931 → v0.940](https://github.com/pre-commit/mirrors-mypy/compare/v0.931...v0.940)
- [github.com/mgedmin/check-manifest: 0.47 → 0.48](https://github.com/mgedmin/check-manifest/compare/0.47...0.48)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-03-18 11:15:52 -07:00
pre-commit-ci[bot]
f8a532a7de
[pre-commit.ci] pre-commit autoupdate (#3800) 
updates:
- [github.com/asottile/pyupgrade: v2.31.0 → v2.31.1](https://github.com/asottile/pyupgrade/compare/v2.31.0...v2.31.1)
- [github.com/sirosen/texthooks: 0.2.2 → 0.3.1](https://github.com/sirosen/texthooks/compare/0.2.2...0.3.1)
- [github.com/hadialqattan/pycln: v1.2.4 → v1.2.5](https://github.com/hadialqattan/pycln/compare/v1.2.4...v1.2.5)
- [github.com/pre-commit/mirrors-mypy: v0.931 → v0.940](https://github.com/pre-commit/mirrors-mypy/compare/v0.931...v0.940)
- [github.com/mgedmin/check-manifest: 0.47 → 0.48](https://github.com/mgedmin/check-manifest/compare/0.47...0.48)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-03-15 10:18:12 -04:00
Ralf W. Grosse-Kunstleve
eb6edd9fac Merge branch 'master' into sh_merge_master 2022-03-10 10:32:48 -08:00
pre-commit-ci[bot]
061c617707
[pre-commit.ci] pre-commit autoupdate (#3765) 
updates:
- [github.com/Lucas-C/pre-commit-hooks: v1.1.12 → v1.1.13](https://github.com/Lucas-C/pre-commit-hooks/compare/v1.1.12...v1.1.13)
- [github.com/hadialqattan/pycln: v1.2.0 → v1.2.4](https://github.com/hadialqattan/pycln/compare/v1.2.0...v1.2.4)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-02-28 21:35:43 -05:00
Ralf W. Grosse-Kunstleve
be43439670 Merge branch 'master' into sh_merge_master 2022-02-23 15:47:03 -08:00
pre-commit-ci[bot]
91f597be5a
[pre-commit.ci] pre-commit autoupdate (#3754) 
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/hadialqattan/pycln: v1.1.0 → v1.2.0](https://github.com/hadialqattan/pycln/compare/v1.1.0...v1.2.0)
- [github.com/pre-commit/mirrors-clang-format: v13.0.0 → v13.0.1](https://github.com/pre-commit/mirrors-clang-format/compare/v13.0.0...v13.0.1)

* Update .pre-commit-config.yaml

* ci: specify which windows image to use

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
 2022-02-23 17:56:41 -05:00
Ralf W. Grosse-Kunstleve
bc2cec0783 Merge branch 'master' into sh_merge_master 2022-02-16 07:15:34 -08:00
Henry Schreiner
4b42c37191
style: pylint (#3720) 
* fix: add pylint and fix issue

* chore: add pylint to pre-commit

* fix: local variable warning surfaced mistake in intree
 2022-02-15 17:48:33 -05:00
pre-commit-ci[bot]
0986af6182
[pre-commit.ci] pre-commit autoupdate (#3672) 
updates:
- [github.com/Lucas-C/pre-commit-hooks: v1.1.11 → v1.1.12](https://github.com/Lucas-C/pre-commit-hooks/compare/v1.1.11...v1.1.12)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-02-15 11:27:00 -05:00
Ralf W. Grosse-Kunstleve
d5e302ce46 Removing uses of env.PY2 and env.PY (no longer available). 
smart_holder_type_casters.h tweaks:
    * Removing MSVC 2015 workaround.
    * Manually adding braces to pre-empt clang-tidy issue (involving `#ifdef`).
    * Removing `// clang-format off` & `on`.
    * One manual line break (moving comment above line).

Adding mypy type information for ubench/*.py
 2022-02-14 18:51:58 -08:00
Ralf W. Grosse-Kunstleve
e1751c04f0 Merge branch 'master' into sh_merge_master_after_clang-format_etc 
First pass manually resolving the many merge conflicts.
 2022-02-14 14:36:08 -08:00
Henry Schreiner
522c59ceb2
chore: drop Python 3.5 (#3719) 
* chore: drop Python 3.5 support

* chore: more fstrings with flynt's help

* ci: drop Python 3.5

* chore: bump dependency versions

* docs: touch up py::args

* tests: remove deprecation warning

* Ban smartquotes

* Very minor tweaks (by-product of reviewing PR #3719).

Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
 2022-02-11 19:06:16 -05:00
Ralf W. Grosse-Kunstleve
6493f496e3
Python 2 removal part 1: tests (C++ code is intentionally ~untouched) (#3688) 
* `#error BYE_BYE_GOLDEN_SNAKE`

* Removing everything related to 2.7 from ci.yml

* Commenting-out Centos7

* Removing `PYTHON: 27` from .appveyor.yml

* "PY2" removal, mainly from tests. C++ code is not touched.

* Systematic removal of `u` prefix from `u"..."` and `u'...'` literals. Collateral cleanup of a couple minor other things.

* Cleaning up around case-insensitive hits for `[^a-z]py.*2` in tests/.

* Removing obsolete Python 2 mention in compiling.rst

* Proper `#error` for Python 2.

* Using PY_VERSION_HEX to guard `#error "PYTHON 2 IS NO LONGER SUPPORTED.`

* chore: bump pre-commit

* style: run pre-commit for pyupgrade 3+

* tests: use sys.version_info, not PY

* chore: more Python 2 removal

* Uncommenting Centos7 block (PR #3691 showed that it is working again).

* Update pre-commit hooks

* Fix pre-commit hook

* refactor: remove Python 2 from CMake

* refactor: remove Python 2 from setup code

* refactor: simplify, better static typing

* feat: fail with nice messages

* refactor: drop Python 2 C++ code

* docs: cleanup for Python 3

* revert: intree

revert: intree

* docs: minor touchup to py2 statement

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
 2022-02-10 18:28:08 -08:00
Ralf W. Grosse-Kunstleve
ec24786eab
Fully-automatic clang-format with include reordering (#3713) 
* chore: add clang-format

* Removing check-style (Classic check-style)

Ported from @henryiii's 53056b1b0e

* Automatic clang-format changes (NO manual changes).

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
 2022-02-10 12:17:07 -08:00
Ralf W. Grosse-Kunstleve
ea0c1e77c8 Merge branch 'master' into sh_merge_master 2022-01-11 17:48:37 -08:00
pre-commit-ci[bot]
b66328b043
[pre-commit.ci] pre-commit autoupdate (#3609) 
updates:
- [github.com/pre-commit/mirrors-mypy: v0.930 → v0.931](https://github.com/pre-commit/mirrors-mypy/compare/v0.930...v0.931)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-01-10 21:13:24 -05:00
Ralf W. Grosse-Kunstleve
73197b392a Merge branch 'master' into smart_holder 2022-01-03 15:56:25 -08:00
pre-commit-ci[bot]
2cd32e5d54
[pre-commit.ci] pre-commit autoupdate (#3589) 
updates:
- [github.com/asottile/pyupgrade: v2.29.1 → v2.31.0](https://github.com/asottile/pyupgrade/compare/v2.29.1...v2.31.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2022-01-03 15:55:21 -08:00
Ralf W. Grosse-Kunstleve
388c03b18c Merge branch 'master' into sh_merge_master_clean 2021-12-29 13:24:20 -08:00
pre-commit-ci[bot]
89769e6e6d
[pre-commit.ci] pre-commit autoupdate (#3574) 
updates:
- [github.com/pre-commit/pre-commit-hooks: v4.0.1 → v4.1.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.0.1...v4.1.0)
- [github.com/pre-commit/mirrors-mypy: v0.920 → v0.930](https://github.com/pre-commit/mirrors-mypy/compare/v0.920...v0.930)
- [github.com/shellcheck-py/shellcheck-py: v0.8.0.2 → v0.8.0.3](https://github.com/shellcheck-py/shellcheck-py/compare/v0.8.0.2...v0.8.0.3)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2021-12-27 18:28:30 -05:00
pre-commit-ci[bot]
d0406c747e
[pre-commit.ci] pre-commit autoupdate (#3563) 
updates:
- [github.com/pre-commit/mirrors-mypy: v0.910-1 → v0.920](https://github.com/pre-commit/mirrors-mypy/compare/v0.910-1...v0.920)
- [github.com/shellcheck-py/shellcheck-py: v0.8.0.1 → v0.8.0.2](https://github.com/shellcheck-py/shellcheck-py/compare/v0.8.0.1...v0.8.0.2)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2021-12-20 23:11:48 -05:00
pre-commit-ci[bot]
59aa99860c
[pre-commit.ci] pre-commit autoupdate (#3533) 
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/psf/black: 21.11b1 → 21.12b0](https://github.com/psf/black/compare/21.11b1...21.12b0)

* Keep blacken-docs in sync

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
 2021-12-06 17:12:03 -05:00
Ralf W. Grosse-Kunstleve
e94b98fd76 Merge branch 'master' into smart_holder 2021-11-22 17:03:58 -08:00
pre-commit-ci[bot]
fe65693c72
[pre-commit.ci] pre-commit autoupdate (#3500) 
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/asottile/pyupgrade: v2.29.0 → v2.29.1](https://github.com/asottile/pyupgrade/compare/v2.29.0...v2.29.1)
- [github.com/psf/black: 21.10b0 → 21.11b1](https://github.com/psf/black/compare/21.10b0...21.11b1)
- [github.com/asottile/blacken-docs: v1.11.0 → v1.12.0](https://github.com/asottile/blacken-docs/compare/v1.11.0...v1.12.0)

* Keep blacken-docs and black in sync.

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Aaron Gokaslan <aaronGokaslan@gmail.com>
 2021-11-22 16:25:35 -05:00
Ralf W. Grosse-Kunstleve
e57afe23f7 Merge branch 'master' into smart_holder 2021-11-20 09:35:40 -08:00
pre-commit-ci[bot]
9422d98fcc
[pre-commit.ci] pre-commit autoupdate (#3473) 
updates:
- [github.com/PyCQA/isort: 5.10.0 → 5.10.1](https://github.com/PyCQA/isort/compare/5.10.0...5.10.1)
- [github.com/shellcheck-py/shellcheck-py: v0.7.2.1 → v0.8.0.1](https://github.com/shellcheck-py/shellcheck-py/compare/v0.7.2.1...v0.8.0.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2021-11-15 22:48:39 -05:00
Ralf W. Grosse-Kunstleve
f4fab85d87 Merge branch 'master' into sh_merge_master 2021-11-15 14:43:08 -08:00
Henry Schreiner
270b11d502
Revert "style: drop pycln" (#3466) 
* Revert "style: drop pycln (#3397)"

This reverts commit 606f81a966.

* Update .pre-commit-config.yaml
 2021-11-13 21:32:58 -05:00
pre-commit-ci[bot]
b322018e15
[pre-commit.ci] pre-commit autoupdate (#3449) 
updates:
- [github.com/PyCQA/isort: 5.9.3 → 5.10.0](https://github.com/PyCQA/isort/compare/5.9.3...5.10.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2021-11-08 15:56:20 -05:00
Ralf W. Grosse-Kunstleve
58c7f076bc Merge branch 'master' into sh_merge_master 2021-11-07 16:26:55 -08:00
pre-commit-ci[bot]
6de30d3172
[pre-commit.ci] pre-commit autoupdate (#3432) 
* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/psf/black: 21.9b0 → 21.10b0](https://github.com/psf/black/compare/21.9b0...21.10b0)

* Update blacken-docs too

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
 2021-11-01 17:22:12 -04:00
Ralf W. Grosse-Kunstleve
4958fd9aa1 Merge branch 'master' into sh_merge_master 2021-10-26 12:10:34 -07:00
pre-commit-ci[bot]
d45a88105c
[pre-commit.ci] pre-commit autoupdate (#3409) 
updates:
- [github.com/asottile/yesqa: v1.2.3 → v1.3.0](https://github.com/asottile/yesqa/compare/v1.2.3...v1.3.0)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2021-10-25 16:06:13 -04:00
Henry Schreiner
606f81a966
style: drop pycln (#3397) 2021-10-22 16:38:40 -04:00
Ralf W. Grosse-Kunstleve
fd68dede10 Merge branch 'master' into sh_merge_master 2021-10-11 13:18:33 -07:00
pre-commit-ci[bot]
02c05573d9
[pre-commit.ci] pre-commit autoupdate (#3353) 
updates:
- [github.com/PyCQA/flake8: 3.9.2 → 4.0.1](https://github.com/PyCQA/flake8/compare/3.9.2...4.0.1)

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
 2021-10-11 16:03:19 -04:00
Aaron Gokaslan
f4c81e0877
maint: Add additional linter-related pre-commit hooks (#3337) 
* Add additional pygrep pre-commit hooks

* Remove useless noqas with hook

* Fix all single rst backticks

* Simplify mypy pre-commit hook with upstream fixes

* Add back missing comment

* Add one last pygrep hook
 2021-10-08 08:38:04 -04:00
Ralf W. Grosse-Kunstleve
5a90dae7fe Merge branch 'master' into smart_holder 2021-10-06 00:47:43 -07:00