Commit Graph

82 Commits

Author SHA1 Message Date
Ralf W. Grosse-Kunstleve
505cd35c2b Adding new tests to CMake config, resetting CI config. 2021-02-09 06:47:07 -08:00
Ralf W. Grosse-Kunstleve
45a6093c3f disabling GitHub Actions on pull_request (for this PR) 2021-02-09 06:47:03 -08:00
Kumar Aditya
948d09d6df
test: Test against Python 3.10 (#2848) 2021-02-08 15:35:30 -05:00
dependabot[bot]
42e7380705
chore(deps): bump jwlawson/actions-setup-cmake from v1.6 to v1.7 (#2818)
Bumps [jwlawson/actions-setup-cmake](https://github.com/jwlawson/actions-setup-cmake) from v1.6 to v1.7.
- [Release notes](https://github.com/jwlawson/actions-setup-cmake/releases)
- [Commits](https://github.com/jwlawson/actions-setup-cmake/compare/v1.6...821902fd0e0da89b13fd3161d358e96bf7550883)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-01-25 15:11:18 -05:00
Henry Schreiner
44105ca1f2 docs: mention that the changelog block in PR is special 2021-01-19 22:47:40 -05:00
Henry Schreiner
2db0264aca
style: add clang-format file (#2310)
* style: adding clang-format as manual hook

* docs: adding a Clang-Format section. (#2803)

Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
2021-01-19 19:10:26 -05:00
Henry Schreiner
87f5aff4a7
ci: update to setup-cmake v1.6 (#2805) 2021-01-19 18:24:46 -05:00
Michael Kuron
48534089f7
fix: Intel ICC C++17 compatibility (#2729)
* CI: Intel icc/icpc via oneAPI

Add testing for Intel icc/icpc via the oneAPI images.
Intel oneAPI is in a late beta stage, currently shipping
oneAPI beta09 with ICC 20.2.

CI: Skip Interpreter Tests for Intel

Cannot find how to add this, neiter the package `libc6-dev` nor
`intel-oneapi-mkl-devel` help when installed to solve this:
```
-- Looking for C++ include pthread.h
-- Looking for C++ include pthread.h - not found
CMake Error at /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:165 (message):
  Could NOT find Threads (missing: Threads_FOUND)
Call Stack (most recent call first):
  /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:458 (_FPHSA_FAILURE_MESSAGE)
  /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindThreads.cmake:234 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
  tests/test_embed/CMakeLists.txt:17 (find_package)
```

CI: libc6-dev from GCC for ICC

CI: Run bare metal for oneAPI

CI: Ubuntu 18.04 for oneAPI

CI: Intel +Catch -Eigen

CI: CMake from Apt (ICC tests)

CI: Replace Intel Py with GCC Py

CI: Intel w/o GCC's Eigen

CI: ICC with verbose make

[Debug] Find core dump

tests: use arg{} instead of arg() for Intel

tests: adding a few more missing {}

fix: sync with @tobiasleibner's branch

fix: try ubuntu 20-04

fix: drop exit 1

docs: Apply suggestions from code review

Co-authored-by: Tobias Leibner <tobias.leibner@googlemail.com>

Workaround for ICC enable_if issues

Another workaround for ICC's enable_if issues

fix error in previous commit

Disable one test for the Intel compiler in C++17 mode

Add back one instance of py::arg().noconvert()

Add NOLINT to fix clang-tidy check

Work around for ICC internal error in PYBIND11_EXPAND_SIDE_EFFECTS in C++17 mode

CI: Intel ICC with C++17

docs: pybind11/numpy.h does not require numpy at build time. (#2720)

This is nice enough to be mentioned explicitly in the docs.

docs: Update warning about Python 3.9.0 UB, now that 3.9.1 has been released (#2719)

Adjusting `type_caster<std::reference_wrapper<T>>` to support const/non-const propagation in `cast_op`. (#2705)

* Allow type_caster of std::reference_wrapper<T> to be the same as a native reference.

Before, both std::reference_wrapper<T> and std::reference_wrapper<const T> would
invoke cast_op<type>. This doesn't allow the type_caster<> specialization for T
to distinguish reference_wrapper types from value types.

After, the type_caster<> specialization invokes cast_op<type&>, which allows
reference_wrapper to behave in the same way as a native reference type.

* Add tests/examples for std::reference_wrapper<const T>

* Add tests which use mutable/immutable variants

This test is a chimera; it blends the pybind11 casters with a custom
pytype implementation that supports immutable and mutable calls.

In order to detect the immutable/mutable state, the cast_op needs
to propagate it, even through e.g. std::reference<const T>

Note: This is still a work in progress; some things are crashing,
which likely means that I have a refcounting bug or something else
missing.

* Add/finish tests that distinguish const& from &

Fixes the bugs in my custom python type implementation,
demonstrate test that requires const& and reference_wrapper<const T>
being treated differently from Non-const.

* Add passing a const to non-const method.

* Demonstrate non-const conversion of reference_wrapper in tests.

Apply formatting presubmit check.

* Fix build errors from presubmit checks.

* Try and fix a few more CI errors

* More CI fixes.

* More CI fixups.

* Try and get PyPy to work.

* Additional minor fixups. Getting close to CI green.

* More ci fixes?

* fix clang-tidy warnings from presubmit

* fix more clang-tidy warnings

* minor comment and consistency cleanups

* PyDECREF -> Py_DECREF

* copy/move constructors

* Resolve codereview comments

* more review comment fixes

* review comments: remove spurious &

* Make the test fail even when the static_assert is commented out.

This expands the test_freezable_type_caster a bit by:
1/ adding accessors .is_immutable and .addr to compare identity
from python.
2/ Changing the default cast_op of the type_caster<> specialization
to return a non-const value. In normal codepaths this is a reasonable
default.
3/ adding roundtrip variants to exercise the by reference, by pointer
and by reference_wrapper in all call paths.  In conjunction with 2/, this
demonstrates the failure case of the existing std::reference_wrpper conversion,
which now loses const in a similar way that happens when using the default cast_op_type<>.

* apply presubmit formatting

* Revert inclusion of test_freezable_type_caster

There's some concern that this test is a bit unwieldly because of the use
of the raw <Python.h> functions. Removing for now.

* Add a test that validates const references propagation.

This test verifies that cast_op may be used to correctly detect
const reference types when used with std::reference_wrapper.

* mend

* Review comments based changes.

1. std::add_lvalue_reference<type> -> type&
2. Simplify the test a little more; we're never returning the ConstRefCaster
type so the class_ definition can be removed.

* formatted files again.

* Move const_ref_caster test to builtin_casters

* Review comments: use cast_op and adjust some comments.

* Simplify ConstRefCasted test

I like this version better as it moves the assertion that matters
back into python.

ci: drop pypy2 linux, PGI 20.7, add Python 10 dev (#2724)

* ci: drop pypy2 linux, add Python 10 dev

* ci: fix mistake

* ci: commented-out PGI 20.11, drop 20.7

fix: regression with installed pybind11 overriding local one (#2716)

* fix: regression with installed pybind11 overriding discovered one

Closes #2709

* docs: wording incorrect

style: remove redundant instance->owned = true (#2723)

which was just before set to True in instance->allocate_layout()

fix: also throw in the move-constructor added by the PYBIND11_OBJECT macro, after the argument has been moved-out (if necessary) (#2701)

Make args_are_all_* ICC workarounds unconditional

Disable test_aligned on Intel ICC

Fix test_aligned on Intel ICC

Skip test_python_alreadyset_in_destructor on Intel ICC

Fix test_aligned again

ICC CI: Downgrade pytest

pytest 6 does not capture the `discard_as_unraisable` stderr and
just writes a warning with its content instead.

* refactor: simpler Intel workaround, suggested by @laramiel

* fix: try version with impl to see if it is easier to compile

* docs: update README for ICC

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2021-01-17 19:53:07 -05:00
Axel Huebl
0b3df7f964
ci: Intel icc/icpc via oneAPI (#2573)
* CI: Intel icc/icpc via oneAPI

Add testing for Intel icc/icpc via the oneAPI images.
Intel oneAPI is in a late beta stage, currently shipping
oneAPI beta09 with ICC 20.2.

* CI: Skip Interpreter Tests for Intel

Cannot find how to add this, neiter the package `libc6-dev` nor
`intel-oneapi-mkl-devel` help when installed to solve this:
```
-- Looking for C++ include pthread.h
-- Looking for C++ include pthread.h - not found
CMake Error at /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:165 (message):
  Could NOT find Threads (missing: Threads_FOUND)
Call Stack (most recent call first):
  /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:458 (_FPHSA_FAILURE_MESSAGE)
  /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindThreads.cmake:234 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
  tests/test_embed/CMakeLists.txt:17 (find_package)
```

* CI: libc6-dev from GCC for ICC

* CI: Run bare metal for oneAPI

* CI: Ubuntu 18.04 for oneAPI

* CI: Intel +Catch -Eigen

* CI: CMake from Apt (ICC tests)

* CI: Replace Intel Py with GCC Py

* CI: Intel w/o GCC's Eigen

* CI: ICC with verbose make

* [Debug] Find core dump

* tests: use arg{} instead of arg() for Intel

* tests: adding a few more missing {}

* fix: sync with @tobiasleibner's branch

* fix: try ubuntu 20-04

* fix: drop exit 1

* style: clang tidy fix

* style: fix missing NOLINT

* ICC: Update Compiler Name

Changed upstream with the last oneAPI release.

* ICC CI: Downgrade pytest

pytest 6 does not capture the `discard_as_unraisable` stderr and
just writes a warning with its content instead.

* Use new test pinning requirements.txt

* tests: add notes about intel, cleanup

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2021-01-15 15:59:47 -05:00
Yannick Jadoul
0f8d5f2eb6
Add a Valgrind build on debug Python 3.9 (#2746)
* Adding a valgrind build on debug Python 3.9

Co-authored-by: Boris Staletic <boris.staletic@gmail.com>

* Add Valgrind suppression files

- Introduce suppression file, populate it with a first suppression taken from CPython, and fix one leak in the tests
- Suppress leak in NumPy
- More clean tests!
- Tests with names a-e passing (except for test_buffer)
- Suppress multiprocessing errors
- Merge multiprocessing suppressions into other suppression files
- Numpy seems to be spelled with a big P
- Append single entry from valgrind-misc.supp to valgrind-python.supp, and make clear valgrind-python.supp is only CPython

Co-authored-by: Boris Staletic <boris.staletic@gmail.com>

* Enable test_virtual_functions with a workaround

* Add a memcheck cmake target

- Add a memcheck cmake target
- Reformat cmake
- Appease the formatting overlords - they are angry
- Format CMake valgrind target decently

* Update CI config to new action versions

* fix: separate memcheck from pytest

* ci: cleanup

* Merge Valgrind and other deadsnakes builds

Co-authored-by: Boris Staletic <boris.staletic@gmail.com>
Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2021-01-15 21:07:31 +01:00
Yannick Jadoul
f243450e89
ci: disable builds for 3.10.0a4, and enable a nightly 3.10-dev build (#2792)
* Disable builds for 3.10.0a4, and enable a nightly 3.10-dev build

* Fix job name

* Remove deadsnakes job for now

* Add deadsnakes jobs

* There's no deadsnakes 2.7

* Add 3.10 to versions to be discovered by legacy FindPython, and fix debug input to deadsnakes/action

* Try out branch with fix

* Update to deadsnakes/action@v2.1.1
2021-01-13 23:13:19 -05:00
Henry Schreiner
5abce7fce2
ci: use fixed action (#2791) 2021-01-13 20:32:11 +01:00
Yannick Jadoul
7b7ec664b7
ci: pin CMake to 3.19.2, fixes issues with 3.19.3 on Linux (aarch64) and macOS (universal) (#2790) 2021-01-13 11:16:35 -05:00
Eric Cousineau
635e3fc92f
CONTRIBUTING: Add suggestion about passing pytest flags (#2738) 2020-12-23 18:02:03 -05:00
Henry Schreiner
d5af536fa1
ci: update cmake action (#2734) 2020-12-21 20:58:40 -05:00
Ralf W. Grosse-Kunstleve
cecdfadc58
minor cleanup: fixing or silencing flake8 errors (#2731)
* minor cleanup: fixing or silencing flake8 errors

* ci: lock CMake to non-Universal version

* Update .github/workflows/ci.yml

Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
2020-12-18 19:41:43 -05:00
Henry Schreiner
499fcd5447
ci: drop pypy2 linux, PGI 20.7, add Python 10 dev (#2724)
* ci: drop pypy2 linux, add Python 10 dev

* ci: fix mistake

* ci: commented-out PGI 20.11, drop 20.7
2020-12-15 21:07:41 -05:00
Henry Schreiner
de78bddd7f
docs: better badges (#2656) 2020-11-15 12:23:33 -05:00
Robert Haschke
b72cebeb22
style: clang-tidy: modernize-use-using (#2645)
* style: clang-tidy: modernize-use-using

* style: more clang-tidy checking

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2020-11-09 10:10:19 -08:00
Henry Schreiner
6d4854a501 ci: correct types statement 2020-11-03 11:59:29 -05:00
Henry Schreiner
6cc233cc32 ci: label PRs when merged only for now 2020-11-03 11:49:45 -05:00
Henry Schreiner
139c05dafa
ci: test on NumPy + Python 3.9 (#2628) 2020-10-29 09:56:00 -04:00
Henry Schreiner
ace4deb4f0
ci: add more jobs (#2610)
* ci: add more jobs

* ci: minor trimdown
2020-10-22 22:34:44 -04:00
Henry Schreiner
8ae11fbf88 ci: add more runs 2020-10-15 17:38:49 -04:00
Yannick Jadoul
493649f965
fix: valgrind-detected after-freeing access of PyMethodDef (macOS Python 3.9.0 segfaults) (#2576)
* Check if valgrind-detected after-freeing access of PyMethodDef causes macOS Python 3.9 segfaults

* fix: only apply leak on 3.9.0

* fix: faster check

* fix: better naming thanks to @bstaletic

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
2020-10-14 14:11:09 -04:00
Henry Schreiner
526a7733c7
ci: merged labels still missing 2020-10-13 19:59:51 -04:00
Henry Schreiner
c99d7f1cc7
docs: PR template (#2580) 2020-10-13 13:09:40 -04:00
Henry Schreiner
7c71dd3861 ci: inverted labeler logic 2020-10-12 23:04:24 -04:00
Henry Schreiner
2f746eeeb4 ci: original labeler 2020-10-12 22:35:23 -04:00
Henry Schreiner
ae2e5a368c
ci: try to get labeler to add needs changelog 2020-10-12 17:03:26 -04:00
Henry Schreiner
4f45052d4c
ci: fix ci label 2020-10-11 23:43:00 -04:00
Henry Schreiner
cd2c25a2bf
ci: adjust labeler match pattern 2020-10-11 20:41:11 -04:00
Henry Schreiner
7d7309b814
ci: monitor dependencies 2020-10-10 22:43:05 -04:00
Henry Schreiner
c02f0ec607 fix: formatting issue 2020-10-09 16:51:23 -04:00
Henry Schreiner
fae45325f6 ci: fix labeler 2020-10-09 16:40:12 -04:00
andriish
59323a975a
ci: update PGI to 20.9 (#2566)
* Update PGI to 20.9

Update PGI to 20.9

* Update ci.yml

* Update ci.yml

* Update README.rst

* Update ci.yml

Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
2020-10-09 15:38:26 -04:00
Henry Schreiner
e4e5c49a26
docs: known issues (#2565)
* docs: FAQ CMake updates

* docs: limitations

* ci: don't over label

* docs: update CHANGELOG, add a bit more structure

* ci: label PRs with more labels, and sooner

* docs: updates from @rwgk

* docs: address @YannickJadoul's points
2020-10-09 11:19:13 -04:00
Henry Schreiner
deba040b6f
test: hide segfault (#2559)
* tests: Don't run tests that often segfault

* tests: drop all cross module gil tests

* tests: try skipping all macOS Python 3.9 tests

* tests: drop macOS Python 3.9
2020-10-08 12:25:04 -04:00
Henry Schreiner
49c389b760
ci: test on Windows 3.8 and 3.9 (mostly) (#2560)
* ci: skip cpptest on Win Py 3.8+

* docs: minor typo caught by @rwgk
2020-10-08 09:04:02 -04:00
Henry Schreiner
b6f37f67ac
docs: minor cleanup (#2555)
* docs: minor cleanup

* ci: fix add-path command

* docs: add example of use in-place

* Update .github/workflows/ci.yml
2020-10-07 20:41:03 -04:00
Henry Schreiner
00edc3001b
fix: PYBIND11_OBJECT required pybind11 namespace (regression) (#2553)
* fix: PYBIND11_OBJECT could only be used inside the pybind11 namespace (regression)

* docs: add changelog for conversion protection change

* ci: update to Python 3.9
2020-10-06 10:04:13 -04:00
Henry Schreiner
2a2f52201d
fix: find_import didn't work properly for classic tools (#2550)
* fix: find_import didn't work properly for classic tools

* ci: fix all files not being checked in style run
2020-10-05 15:31:00 -04:00
Henry Schreiner
ca4127ce07
ci: fix labeler 2020-10-02 17:09:58 -04:00
Henry Schreiner
1bcd5f0a19
Update pr_merged.yml 2020-10-02 16:59:04 -04:00
Henry Schreiner
5f9b16672f
ci: label PRs with changelog needed (#2546) 2020-10-02 16:56:19 -04:00
Henry Schreiner
01ad89209a ci: publish in two steps 2020-09-30 17:46:55 -04:00
Henry Schreiner
1994691a9c
ci: download artifact issue 2020-09-30 17:05:32 -04:00
Henry Schreiner
82dbc5b78f
ci: releases (#2530)
* ci: releases

* docs: minor update form @wjakob

* fix: enforce reasonable version of setuptools
2020-09-30 15:48:08 -04:00
Henry Schreiner
8fa70e7483
ci: fix broken documenation test (works on RtD) (#2506)
* ci: fix broken documenation test (works on RtD)

* docs: docs link incorrect
2020-09-17 21:18:15 -04:00
Henry Schreiner
fd61f5038e
feat: setup.py redesign and helpers (#2433)
* feat: setup.py redesign and helpers

* refactor: simpler design with two outputs

* refactor: helper file update and Windows support

* fix: review points from @YannickJadoul

* refactor: fixes to naming and more docs

* feat: more customization points

* feat: add entry point pybind11-config

* refactor: Try Extension-focused method

* refactor: rename alt/inplace to global

* fix: allow usage with git modules, better docs

* feat: global as an extra (@YannickJadoul's suggestion)

* feat: single version location

* fix: remove the requirement that setuptools must be imported first

* fix: some review points from @wjacob

* fix: use .in, add procedure to docs

* refactor: avoid monkeypatch copy

* docs: minor typos corrected

* fix: minor points from @YannickJadoul

* fix: typo on Windows C++ mode

* fix: MSVC 15 update 3+ have c++14 flag

See <https://docs.microsoft.com/en-us/cpp/build/reference/std-specify-language-standard-version?view=vs-2019>

* docs: discuss making SDists by hand

* ci: use pep517.build instead of manual setup.py

* refactor: more comments from @YannickJadoul

* docs: updates from @ktbarrett

* fix: change to newly recommended tool instead of pep517.build

This was intended as a proof of concept; build seems to be the correct replacement.

See https://github.com/pypa/pep517/pull/83

* docs: updates from @wjakob

* refactor: dual version locations

* docs: typo spotted by @wjakob
2020-09-16 17:13:41 -04:00