When converting an array to an Eigen matrix, ignore the strides if any
dimension size is 0. If the array is empty, the strides aren't relevant,
and especially numpy ≥ 1.23 explicitly sets the strides to 0 in this
case. (See numpy commit dd5ab7b11520.)
Update tests to verify that this works, and continues to work.
* Adding MSVC C4127 suppression around Eigen includes.
* For MSVC 2015 only: also adding the C4127 suppression to test_eigen.cpp
* Copying original change from PR #3343, with extra line breaks to not run past 99 columns (our desired but currently not enforced limit).
* Manually moving `// NOLINT` comments so that clang-format does not move them to the wrong places.
* Manually reformatting comments related to `static_assert`s so that clang-format does not need two passes.
* Empty lines between #includes, to prevent clang-format from shuffling the order and thereby confusing MSVC 2015.
* git diff -U0 --no-color HEAD^ | python3 $HOME/clone/llvm-project/clang/tools/clang-format/clang-format-diff.py -p1 -style=file -i
* CI: Intel icc/icpc via oneAPI
Add testing for Intel icc/icpc via the oneAPI images.
Intel oneAPI is in a late beta stage, currently shipping
oneAPI beta09 with ICC 20.2.
* CI: Skip Interpreter Tests for Intel
Cannot find how to add this, neiter the package `libc6-dev` nor
`intel-oneapi-mkl-devel` help when installed to solve this:
```
-- Looking for C++ include pthread.h
-- Looking for C++ include pthread.h - not found
CMake Error at /__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:165 (message):
Could NOT find Threads (missing: Threads_FOUND)
Call Stack (most recent call first):
/__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:458 (_FPHSA_FAILURE_MESSAGE)
/__t/cmake/3.18.4/x64/cmake-3.18.4-Linux-x86_64/share/cmake-3.18/Modules/FindThreads.cmake:234 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
tests/test_embed/CMakeLists.txt:17 (find_package)
```
* CI: libc6-dev from GCC for ICC
* CI: Run bare metal for oneAPI
* CI: Ubuntu 18.04 for oneAPI
* CI: Intel +Catch -Eigen
* CI: CMake from Apt (ICC tests)
* CI: Replace Intel Py with GCC Py
* CI: Intel w/o GCC's Eigen
* CI: ICC with verbose make
* [Debug] Find core dump
* tests: use arg{} instead of arg() for Intel
* tests: adding a few more missing {}
* fix: sync with @tobiasleibner's branch
* fix: try ubuntu 20-04
* fix: drop exit 1
* style: clang tidy fix
* style: fix missing NOLINT
* ICC: Update Compiler Name
Changed upstream with the last oneAPI release.
* ICC CI: Downgrade pytest
pytest 6 does not capture the `discard_as_unraisable` stderr and
just writes a warning with its content instead.
* Use new test pinning requirements.txt
* tests: add notes about intel, cleanup
Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
* tests: refactor and cleanup
* refactor: more consistent
* tests: vendor six
* tests: more xfails, nicer system
* tests: simplify to info
* tests: suggestions from @YannickJadoul and @bstaletic
* tests: restore some pypy tests that now pass
* tests: rename info to env
* tests: strict False/True
* tests: drop explicit strict=True again
* tests: reduce minimum PyTest to 3.1
In the latest MSVC in C++17 mode including Eigen causes warnings:
warning C4996: 'std::unary_negate<_Fn>': warning STL4008: std::not1(),
std::not2(), std::unary_negate, and std::binary_negate are deprecated in
C++17. They are superseded by std::not_fn(). You can define
_SILENCE_CXX17_NEGATORS_DEPRECATION_WARNING or
_SILENCE_ALL_CXX17_DEPRECATION_WARNINGS to acknowledge that you have
received this warning.
This disables 4996 for the Eigen includes.
Catch generates a similar warning for std::uncaught_exception, so
disable the warning there, too.
In both cases this is temporary; we can (and should) remove the warnings
disabling once new upstream versions of Eigen and Catch are available
that address the warning. (The Catch one, in particular, looks to be
fixed in upstream master, so will probably be fixed in the next (2.0.2)
release).
This fixes a bug introduced in b68959e822
when passing in a two-dimensional, but conformable, array as the value
for a compile-time Eigen vector (such as VectorXd or RowVectorXd). The
commit switched to using numpy to copy into the eigen data, but this
broke the described case because numpy refuses to broadcast a (N,1)
into a (N).
This commit fixes it by squeezing the input array whenever the output
array is 1-dimensional, which will let the problematic case through.
(This shouldn't squeeze inappropriately as dimension compatibility is
already checked for conformability before getting to the copy code).
This udpates all the remaining tests to the new test suite code and
comment styles started in #898. For the most part, the test coverage
here is unchanged, with a few minor exceptions as noted below.
- test_constants_and_functions: this adds more overload tests with
overloads with different number of arguments for more comprehensive
overload_cast testing. The test style conversion broke the overload
tests under MSVC 2015, prompting the additional tests while looking
for a workaround.
- test_eigen: this dropped the unused functions `get_cm_corners` and
`get_cm_corners_const`--these same tests were duplicates of the same
things provided (and used) via ReturnTester methods.
- test_opaque_types: this test had a hidden dependence on ExampleMandA
which is now fixed by using the global UserType which suffices for the
relevant test.
- test_methods_and_attributes: this required some additions to UserType
to make it usable as a replacement for the test's previous SimpleType:
UserType gained a value mutator, and the `value` property is not
mutable (it was previously readonly). Some overload tests were also
added to better test overload_cast (as described above).
- test_numpy_array: removed the untemplated mutate_data/mutate_data_t:
the templated versions with an empty parameter pack expand to the same
thing.
- test_stl: this was already mostly in the new style; this just tweaks
things a bit, localizing a class, and adding some missing
`// test_whatever` comments.
- test_virtual_functions: like `test_stl`, this was mostly in the new
test style already, but needed some `// test_whatever` comments.
This commit also moves the inherited virtual example code to the end
of the file, after the main set of tests (since it is less important
than the other tests, and rather length); it also got renamed to
`test_inherited_virtuals` (from `test_inheriting_repeat`) because it
tests both inherited virtual approaches, not just the repeat approach.
Many of the Eigen type casters' name() methods weren't wrapping the type
description in a `type_descr` object, which thus wasn't adding the
"{...}" annotation used to identify an argument which broke the help
output by skipping eigen arguments.
The test code I had added even had some (unnoticed) broken output (with
the "arg0: " showing up in the return value).
This commit also adds test code to ensure that named eigen arguments
actually work properly, despite the invalid help output. (The added
tests pass without the rest of this commit).
Fixes#738
The current check for conformability fails when given a 2D, 1xN or Nx1
input to a row-major or column-major, respectively, Eigen::Ref, leading
to a copy-required state in the type_caster, but this later failed
because the copy was also non-conformable because it had the same shape
and strides (because a 1xN or Nx1 is both F and C contiguous).
In such cases we can safely ignore the stride on the "1" dimension since
it'll never be used: only the "N" dimension stride needs to match the
Eigen::Ref stride, which both fixes the non-conformable copy problem,
but also avoids a copy entirely as long as the "N" dimension has a
compatible stride.
This commit largely rewrites the Eigen dense matrix support to avoid
copying in many cases: Eigen arguments can now reference numpy data, and
numpy objects can now reference Eigen data (given compatible types).
Eigen::Ref<...> arguments now also make use of the new `convert`
argument use (added in PR #634) to avoid conversion, allowing
`py::arg().noconvert()` to be used when binding a function to prohibit
copying when invoking the function. Respecting `convert` also means
Eigen overloads that avoid copying will be preferred during overload
resolution to ones that require copying.
This commit also rewrites the Eigen documentation and test suite to
explain and test the new capabilities.
Currently when we do a conversion between a numpy array and an Eigen
Vector, we allow the conversion only if the Eigen type is a
compile-time vector (i.e. at least one dimension is fixed at 1 at
compile time), or if the type is dynamic on *both* dimensions.
This means we can run into cases where MatrixXd allow things that
conforming, compile-time sizes does not: for example,
`Matrix<double,4,Dynamic>` is currently not allowed, even when assigning
from a 4-element vector, but it *is* allowed for a
`Matrix<double,Dynamic,Dynamic>`.
This commit also reverts the current behaviour of using the matrix's
storage order to determine the structure when the Matrix is fully
dynamic (i.e. in both dimensions). Currently we assign to an eigen row
if the storage order is row-major, and column otherwise: this seems
wrong (the storage order has nothing to do with the shape!). While
numpy doesn't distinguish between a row/column vector, Eigen does, but
it makes more sense to consistently choose one than to produce
something with a different shape based on the intended storage layout.
This adds automatic casting when assigning to python types like dict,
list, and attributes. Instead of:
dict["key"] = py::cast(val);
m.attr("foo") = py::cast(true);
list.append(py::cast(42));
you can now simply write:
dict["key"] = val;
m.attr("foo") = true;
list.append(42);
Casts needing extra parameters (e.g. for a non-default rvp) still
require the py::cast() call. set::add() is also supported.
All usage is channeled through a SFINAE implementation which either just returns or casts.
Combined non-converting handle and autocasting template methods via a
helper method that either just returns (handle) or casts (C++ type).
Adding or removing tests is a little bit cumbersome currently: the test
needs to be added to CMakeLists.txt, the init function needs to be
predeclared in pybind11_tests.cpp, then called in the plugin
initialization. While this isn't a big deal for tests that are being
committed, it's more of a hassle when working on some new feature or
test code for which I temporarily only care about building and linking
the test being worked on rather than the entire test suite.
This commit changes tests to self-register their initialization by
having each test initialize a local object (which stores the
initialization function in a static variable). This makes changing the
set of tests being build easy: one only needs to add or comment out
test names in tests/CMakeLists.txt.
A couple other minor changes that go along with this:
- test_eigen.cpp is now included in the test list, then removed if eigen
isn't available. This lets you disable the eigen tests by commenting
it out, just like all the other tests, but keeps the build working
without eigen eigen isn't available. (Also, if it's commented out, we
don't even bother looking for and reporting the building with/without
eigen status message).
- pytest is now invoked with all the built test names (with .cpp changed
to .py) so that it doesn't try to run tests that weren't built.
Use simple asserts and pytest's powerful introspection to make testing
simpler. This merges the old .py/.ref file pairs into simple .py files
where the expected values are right next to the code being tested.
This commit does not touch the C++ part of the code and replicates the
Python tests exactly like the old .ref-file-based approach.
