Commit Graph

150 Commits

Author SHA1 Message Date
Ralf W. Grosse-Kunstleve
550d4b7490 Merge branch 'master' into sh_merge_master 2023-02-16 15:02:47 -08:00
Mike Essenmacher
531144dddc
Replace "whitelist" with "allowlist" (#4506) 2023-02-09 10:11:01 -08:00
Ralf W. Grosse-Kunstleve
81f5831b35 Merge branch 'master' into sh_merge_master 2022-12-20 23:43:34 -08:00
Ethan Steinberg
ee4b9f5d7b
Fix ODR violations in our Eigen Tensor tests (#4412)
* First

* Fix centos 7 again :(

* Fix minor nits
2022-12-20 05:34:00 -08:00
Ralf W. Grosse-Kunstleve
4766065e5c
[smart_holder] test_class_sh_mi_thunks (started from PR #4374) (#4380)
* Content of PR #4374 applied on top of smart_holder branch.

* More tests, with USE_SH switch. [ci skip]

* Use `std::dynamic_pointer_cast<Base0>` [ci skip]

* All tests pass when using `m.make_derived_as_base0_raw_ptr()`, with `USE_SH` defined or not defined. [ci skip]

* WIP

* Debug LOOOK & one-line bug fix:

```diff
-        auto smhldr = pybindit::memory::smart_holder::from_shared_ptr(src);
+        auto smhldr = pybindit::memory::smart_holder::from_shared_ptr(std::shared_ptr<void>(src, const_cast<void *>(st.first)));
```

* Remove all print LOOOK and clang-format the fix.

* Resolve clang-tidy errors.

* Systematic test matrix.

* Bug fix in `smart_holder_type_caster<std::unique_ptr<T, D>>::cast()`

* Rename: test_mi_debug -> test_class_sh_mi_thunks

* Add `test_ptrdiff_derived_base0()`

* Miscellaneous polishing (naming, comments). No functional changes.

* Improve test_class_sh_mi_thunks.py implementation. No change in test coverage.

* Resolve clang-tidy error.
2022-12-12 19:55:16 -08:00
Ralf W. Grosse-Kunstleve
8720cf94d6
cast.h return_value_policy_override _clif_automatic (#4364) 2022-11-28 11:10:37 -08:00
Ralf W. Grosse-Kunstleve
50da709678 Merge branch 'master' into sh_merge_master 2022-10-18 17:00:46 -07:00
Lalaland
fab1eebe2c
First draft of Eigen::Tensor support (#4201)
* First draft of Eigen::Tensor support

* [pre-commit.ci] auto fixes from pre-commit.com hooks

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* Fix build errors

* Weird allocator stuff?

* [pre-commit.ci] auto fixes from pre-commit.com hooks

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* Remove unused + additional allocator junk

* Disable warning

* Use constexpr

* [pre-commit.ci] auto fixes from pre-commit.com hooks

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* clang tidy fixes

* [pre-commit.ci] auto fixes from pre-commit.com hooks

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* Resolve comments

* [pre-commit.ci] auto fixes from pre-commit.com hooks

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* Remove auto constexpr function

* [pre-commit.ci] auto fixes from pre-commit.com hooks

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* Try again for older C++

* Oops forgot constexpr

* Move to new files as suggested

* [pre-commit.ci] auto fixes from pre-commit.com hooks

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* Fix weird tests

* Fix nits

* [pre-commit.ci] auto fixes from pre-commit.com hooks

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* Oops, forgot import

* Fix clang 3.6 bug

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* More comprehensive test suite

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* Refactor allocators to make things more clear

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* Switch to std::copy

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* Switch to DSizes instead of array

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* Address feedback

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* Fix python + dummy c++ change to trigger build

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* Alignment

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* Add include guard

* Forgot inline

* Fix compiler warning

* Remove bad test

* Better type signatures

* Add guards to make compiler requirements more explicit

* style: pre-commit fixes

* Force rerun of tests due to flake

* style: pre-commit fixes

* Keep pragmas & all related comments together, add PLEASE KEEP IN SYNC

* Move headers out of detail

* style: pre-commit fixes

* Fix cmake

* Improve casting

* style: pre-commit fixes

* Add a ton more tests + refactor

* Improve names

* style: pre-commit fixes

* Update include/pybind11/eigen/tensor.h

Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>

* Fix tests

* style: pre-commit fixes

* Update

* Add a test to verify that strange numpy arrays work

* Fix dumb compiler warning

* Better tests

* Better tests

* Fix tests

* style: pre-commit fixes

* More test fixes

* style: pre-commit fixes

* A ton more test coverage

* Fix tests

* style: pre-commit fixes

* style: pre-commit fixes

* Add back constexpr

* Another test

* style: pre-commit fixes

* Improve tests

* Whoops

* Less magic numbers

* Update tests/test_eigen_tensor.py

Co-authored-by: Sergiu Deitsch <sergiud@users.noreply.github.com>

* Update tests/test_eigen_tensor.py

Co-authored-by: Sergiu Deitsch <sergiud@users.noreply.github.com>

* style: pre-commit fixes

* Fix tests

* style: pre-commit fixes

* Fix memory leak

* style: pre-commit fixes

* Fix order

* style: pre-commit fixes

* Add test to make sure unsafe casts fail

* Minor bug fix to work on 32 bit machines

* Implement convert flag

* style: pre-commit fixes

* Switch to correct TensorMap const use

* style: pre-commit fixes

* Support older versions of eigen

* Weird c++ compilers

* Fix Eigen bug

* Fix another eigen bug

* Yet another eigen bug

* Potential flakes?

* style: pre-commit fixes

* Rerun tests with dummy exception to find out what is going on

* Another dummy test run

* Ablate more

* Found the broken test?

* One step closer

* one step further

* Double check

* one thing at a time

* Give up and disable the test

* Clang lies about being gcc

* Oops, fix matrix test

* style: pre-commit fixes

* Add tests to verify scalar conversions

* style: pre-commit fixes

* Fix nits

* Support no_array

* Fix tests

* style: pre-commit fixes

* Silence compiler warning

* Improve build system for ancient compilers

* Make clang happy

* Make gcc happy

* Implement Skylion's suggestions

* Fix warning

* Inline const pointer check

* Implement suggestions

* style: pre-commit fixes

* Improve tests

* Typo

* style: pre-commit fixes

* Support Google's build environment

* style: pre-commit fixes

* Update include/pybind11/eigen/tensor.h

Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>

* style: pre-commit fixes

* Test cleanup per Skylion

* Switch to remvove_cv_t

* Cleaner test

* style: pre-commit fixes

* Remove tensor from eigen.h, update tests

* style: pre-commit fixes

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
Co-authored-by: Aaron Gokaslan <aaronGokaslan@gmail.com>
Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
Co-authored-by: Sergiu Deitsch <sergiud@users.noreply.github.com>
2022-10-18 16:54:16 -07:00
Ralf W. Grosse-Kunstleve
c557f9a3ad
[smart_holder] type_caster ODR guard (#4022)
* Insert type_caster_odr_guard<> (an empty struct to start with).

* Add odr_guard_registry() used in type_caster_odr_guard() default constructor.

* Add minimal_real_caster (from PR #3862) to test_async, test_buffers

* VERY MESSY SNAPSHOT of WIP, this was the starting point for cl/454658864, which has more changes on top.

* Restore original test_async, test_buffers from current smart_holder HEAD

* Copy from cl/454991845 snapshot Jun 14, 5:08 PM

* Cleanup of tests. Systematically insert `if (make_caster<T>::translation_unit_local) {`

* Small simplification of odr_guard_impl()

* WIP

* Add PYBIND11_SOURCE_FILE_LINE macro.

* Replace PYBIND11_TYPE_CASTER_UNIQUE_IDENTIFIER with PYBIND11_TYPE_CASTER_SOURCE_FILE_LINE, baked into PYBIND11_TYPE_CASTER macro.

* Add more PYBIND11_DETAIL_TYPE_CASTER_ACCESS_TRANSLATION_UNIT_LOCAL; resolves "unused" warning when compiling test_custom_type_casters.cpp

* load_type fixes & follow-on cleanup

* Strip ./ from source_file_line

* Add new tests to CMakeLists.txt, disable PYBIND11_WERROR

* Replace C++17 syntax. Compiles with Debian clang 13 C++11 mode, but fails to link. Trying GitHub Actions anyway to see if there are any platforms that support https://en.cppreference.com/w/cpp/language/tu_local before C++20. Note that Debian clang 13 C++17 works locally.

* Show C++ version along with ODR VIOLATION DETECTED message.

* Add source_file_line_basename()

* Introduce PYBIND11_TYPE_CASTER_ODR_GUARD_ON (but not set automatically).

* Minor cleanup.

* Set PYBIND11_TYPE_CASTER_ODR_GUARD_ON automatically.

* Resolve clang-tidy error.

* Compatibility with old compilers.

* Fix off-by-one in source_file_line_basename()

* Report PYBIND11_INTERNALS_ID & C++ Version from pytest_configure()

* Restore use of PYBIND11_WERROR

* Move cpp_version_in_use() from cast.h to pybind11_tests.cpp

* define PYBIND11_DETAIL_ODR_GUARD_IMPL_THROW_DISABLED true in test_odr_guard_1,2.cpp

* IWYU cleanup of detail/type_caster_odr_guard.h

* Replace `throw err;` to resolve clang-tidy error.

* Add new header filename to CMakeLists.txt, test_files.py

* Experiment: Try any C++17 compiler.

* Fix ifdef for pragma GCC diagnostic.

* type_caster_odr_guard_impl() cleanup

* Move type_caster_odr_guard to type_caster_odr_guard.h

* Rename test_odr_guard* to test_type_caster_odr_guard*

* Remove comments that are (now) more distracting than helpful.

* Mark tu_local_no_data_always_false operator bool as explicit (clang-tidy). See also: https://stackoverflow.com/questions/39995573/when-can-i-use-explicit-operator-bool-without-a-cast

* New PYBIND11_TYPE_CASTER_ODR_GUARD_STRICT option (current on by default).

* Add test_type_caster_odr_registry_values(), test_type_caster_odr_violation_detected_counter()

* Report UNEXPECTED: test_type_caster_odr_guard_2.cpp prevailed (but do not fail).

* Apply clang-tidy suggestion.

* Attempt to handle valgrind behavior.

* Another attempt to handle valgrind behavior.

* Yet another attempt to handle valgrind behavior.

* Trying a new direction: show compiler info & std for UNEXPECTED: type_caster_odr_violation_detected_count() == 0

* compiler_info MSVC fix. num_violations == 0 condition.

* assert pybind11_tests.compiler_info is not None

* Introduce `make_caster_intrinsic<T>`, to be able to undo the 2 changes from `load_type` to `load_type<T>`. This is to avoid breaking 2 `pybind11::detail::load_type()` calls found in the wild (Google global testing).

One of the breakages in the wild was: 0f0f600767/python/tensorstore/subscript_method.h (L61)

* Add test for stl.h / stl_bind.h mix.

Manually verified that the ODR guard detects the ODR violation:

```
C++ Info: Debian Clang 13.0.1 C++17 __pybind11_internals_v4_clang_libstdcpp_cxxabi1002_sh_def__
=========================================================== test session starts ============================================================
platform linux -- Python 3.9.12, pytest-6.2.3, py-1.10.0, pluggy-0.13.1 -- /usr/bin/python3
...
================================================================= FAILURES =================================================================
_____________________________________________ test_type_caster_odr_violation_detected_counter ______________________________________________

    def test_type_caster_odr_violation_detected_counter():
        ...
        else:
>           assert num_violations == 1
E           assert 2 == 1
E             +2
E             -1

num_violations = 2

test_type_caster_odr_guard_1.py:51: AssertionError
========================================================= short test summary info ==========================================================
FAILED test_type_caster_odr_guard_1.py::test_type_caster_odr_violation_detected_counter - assert 2 == 1
======================================================= 1 failed, 5 passed in 0.08s ========================================================
```

* Eliminate need for `PYBIND11_DETAIL_TYPE_CASTER_ACCESS_TRANSLATION_UNIT_LOCAL` macro.

Copying code first developed by @amauryfa. I tried this at an earlier stage, but by itself this was insufficient. In the meantime I added in the TU-local mechanisms: trying again.

Passes local testing:
```
DISABLED std::system_error: ODR VIOLATION DETECTED: pybind11::detail::type_caster<mrc_ns::type_mrc>: SourceLocation1="/usr/local/google/home/rwgk/forked/pybind11/tests/test_type_caster_odr_guard_1.cpp:18", SourceLocation2="/usr/local/google/home/rwgk/forked/pybind11/tests/test_type_caster_odr_guard_2.cpp:19"
C++ Info: Debian Clang 13.0.1 C++17 __pybind11_internals_v4_clang_libstdcpp_cxxabi1002_sh_def__
=========================================================== test session starts ============================================================
platform linux -- Python 3.9.12, pytest-6.2.3, py-1.10.0, pluggy-0.13.1 -- /usr/bin/python3
cachedir: .pytest_cache
rootdir: /usr/local/google/home/rwgk/forked/pybind11/tests, configfile: pytest.ini
collected 6 items

test_type_caster_odr_guard_1.py::test_type_mrc_to_python PASSED
test_type_caster_odr_guard_1.py::test_type_mrc_from_python PASSED
test_type_caster_odr_guard_1.py::test_type_caster_odr_registry_values PASSED
test_type_caster_odr_guard_1.py::test_type_caster_odr_violation_detected_counter PASSED
test_type_caster_odr_guard_2.py::test_type_mrc_to_python PASSED
test_type_caster_odr_guard_2.py::test_type_mrc_from_python PASSED

============================================================ 6 passed in 0.01s =============================================================
```

* tu_local_descr with src_loc experiment

* clang-tidy suggested fixes

* Use source_file_line_from_sloc in type_caster_odr_guard_registry

* Disable type_caster ODR guard for __INTEL_COMPILER (see comment). Also turn off printf.

* Add missing include (discovered via google-internal testing).

* Work `scr_loc` into `descr`

* Use `TypeCasterType::name.sloc` instead of `source_file_line.sloc`

Manual re-verification:

```
+++ b/tests/test_type_caster_odr_guard_2.cpp
-    // m.def("pass_vector_type_mrc", mrc_ns::pass_vector_type_mrc);
+    m.def("pass_vector_type_mrc", mrc_ns::pass_vector_type_mrc);
```

```
>           assert num_violations == 1
E           assert 2 == 1

num_violations = 2

test_type_caster_odr_guard_1.py:51: AssertionError
```

* Fix small oversight (src_loc::here() -> src_loc{nullptr, 0}).

* Remove PYBIND11_DETAIL_TYPE_CASTER_ACCESS_TRANSLATION_UNIT_LOCAL macro completely.

* Remove PYBIND11_TYPE_CASTER_SOURCE_FILE_LINE macro completely. Some small extra cleanup.

* Minor tweaks looking at the PR with a fresh eye.

* src_loc comments

* Add new test_descr_src_loc & and fix descr.h `concat()` `src_loc` bug discovered while working on the test.

* Some more work on source code comments.

* Fully document the ODR violations in the ODR guard itself and introduce `PYBIND11_TYPE_CASTER_ODR_GUARD_ON_IF_AVAILABLE`

* Update comment (incl. mention of deadsnakes known to not work as intended).

* Use no-destructor idiom for type_caster_odr_guard_registry, as suggested by @laramiel

* Fix clang-tidy error: 'auto reg' can be declared as 'auto *reg' [readability-qualified-auto,-warnings-as-errors]

* WIP

* Revert "WIP" (tu_local_no_data_always_false_base experiment).

This reverts commit 31e8ac562f.

* Change `PYBIND11_TYPE_CASTER_ODR_GUARD_ON` to `PYBIND11_ENABLE_TYPE_CASTER_ODR_GUARD`, based on a suggestion by @rainwoodman

* Improved `#if` determining `PYBIND11_ENABLE_TYPE_CASTER_ODR_GUARD`, based on suggestion by @laramiel

* Make `descr::sloc` `const`, as suggested by @rainwoodman

* Rename macro to `PYBIND11_DETAIL_TYPE_CASTER_ODR_GUARD_IMPL_DEBUG`, as suggested by @laramiel

* Tweak comments some more (add "white hat hacker" analogy).

* Bring back `PYBIND11_CPP17` in determining `PYBIND11_ENABLE_TYPE_CASTER_ODR_GUARD`, to hopefully resolve most if not all of the many CI failures (89 failing, 32 successful: https://github.com/pybind/pybind11/runs/7430295771).

* Try another workaround for `__has_builtin`-related breakages (https://github.com/pybind/pybind11/runs/7430720321).

* Remove `defined(__has_builtin)` and subconditions.

* Update "known to not work" expectation in test and comment.

* `pytest.skip` `num_violations == 0` only `#ifdef __NO_INLINE__` (irrespective of the compiler)

* Systematically change all new `#ifdef` to `#if defined` (review suggestion).

* Bring back MSVC comment that got lost while experimenting.
2022-07-21 06:38:21 -07:00
Ralf W. Grosse-Kunstleve
203cc26f5b
[smart_holder] Add test_namespace_visibility (#4050)
* Add test_namespace_visibility

To probe environment/toolchain/platform-specific behavior under the exact same conditions as normal tests.

(An earlier version of this code was used to inform PR #4043.)

* Disable flake8 in ubench/holder_comparison_*.py, to suppress new & useless diagnostics.

* Disable namespace_visibility_1s.cpp (tosee if that resolves the MSVC and CUDA `test_cross_module_exception_translator` failures).

* Turn off flake8 completely for ubench (the Strip unnecessary `# noqa`s action un-helpfully removed the added noqa).

* Disable test_namespace_visibility completely. Just keep the two .cpp files, only setting the module docstring and doing nothing else.

* Rename test_namespace_visibility.py to test_exc_namespace_visibility.py, so that it is imported by pytest before test_exceptions.py

* Add `set_property(SOURCE namespace_visibility_1s.cpp PROPERTY LANGUAGE CUDA)`

* Add reference to PR #4054

* Complete the documentation (comments in test_exc_namespace_visibility.py).

* Rename namespace_visibility.h to namespace_visibility.inl, as suggested by @charlesbeattie
2022-07-12 18:33:42 -07:00
Ralf W. Grosse-Kunstleve
485dacef6a Merge branch 'master' into sh_merge_master 2022-06-01 14:39:51 -07:00
Ralf W. Grosse-Kunstleve
de4ba92c9f
Add error_scope to detail::get_internals() (#3981)
* Add `error_scope` to `detail::get_internals()`

* Adjust test to tolerate macOS PyPy behavior.
2022-05-31 11:51:13 -07:00
Ralf W. Grosse-Kunstleve
bdf22c8ee7 Merge branch 'master' into sh_merge_master 2022-05-17 16:37:59 -07:00
Ralf W. Grosse-Kunstleve
d28c3a5da7
[smart_holder] .def_readonly, .def_readwrite adaptors (continuation of PR #3581). (#3844)
* Transferred net diff from PR #3581, as-is.

* Automatic `pre-commit run --all-files` fixes. NO manual changes.

* Removing trailing `//` (originally added to manipulate clang-format), as suggested by @charlesbeattie back in Jan/Feb under PR #3581.

* Renaming `xetter_cpp_function` to `property_cpp_function` as suggested by @rainwoodman

* Fully explain the terse variable naming scheme in test_class_sh_property (as suggested by @rainwoodman)

* Also use parametrize for readonly, readwrite (as suggested by @rainwoodman)

* Apply change suggested by @skylion007 (with clang-format).
2022-05-17 16:35:43 -07:00
Henry Schreiner
1a7b12983e
ci: fix cuda issue & MSVC spurious warning (#3950)
* ci: fix cuda issue

* ci: cuda 11.3-11.4 produce warnings -> errors

* tests: ignore unused warning for MSVC

* Update tests/CMakeLists.txt
2022-05-16 17:27:19 -04:00
Ralf W. Grosse-Kunstleve
e1751c04f0 Merge branch 'master' into sh_merge_master_after_clang-format_etc
First pass manually resolving the many merge conflicts.
2022-02-14 14:36:08 -08:00
Ralf W. Grosse-Kunstleve
6493f496e3
Python 2 removal part 1: tests (C++ code is intentionally ~untouched) (#3688)
* `#error BYE_BYE_GOLDEN_SNAKE`

* Removing everything related to 2.7 from ci.yml

* Commenting-out Centos7

* Removing `PYTHON: 27` from .appveyor.yml

* "PY2" removal, mainly from tests. C++ code is not touched.

* Systematic removal of `u` prefix from `u"..."` and `u'...'` literals. Collateral cleanup of a couple minor other things.

* Cleaning up around case-insensitive hits for `[^a-z]py.*2` in tests/.

* Removing obsolete Python 2 mention in compiling.rst

* Proper `#error` for Python 2.

* Using PY_VERSION_HEX to guard `#error "PYTHON 2 IS NO LONGER SUPPORTED.`

* chore: bump pre-commit

* style: run pre-commit for pyupgrade 3+

* tests: use sys.version_info, not PY

* chore: more Python 2 removal

* Uncommenting Centos7 block (PR #3691 showed that it is working again).

* Update pre-commit hooks

* Fix pre-commit hook

* refactor: remove Python 2 from CMake

* refactor: remove Python 2 from setup code

* refactor: simplify, better static typing

* feat: fail with nice messages

* refactor: drop Python 2 C++ code

* docs: cleanup for Python 3

* revert: intree

revert: intree

* docs: minor touchup to py2 statement

Co-authored-by: Henry Schreiner <henryschreineriii@gmail.com>
Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
2022-02-10 18:28:08 -08:00
Xiaofei Wang
93a376a40a
[smart_holder] Add missing test case to CMakeLists.txt (#3645)
* Add missing test case to CMakeLists.txt

* Fix warnings

* Fix Clangtidy
2022-01-25 16:43:11 -08:00
Ralf W. Grosse-Kunstleve
aa209cc90f Adding back test_class_sh, test_classh additions, building on PR #3590. 2022-01-11 17:48:59 -08:00
Ralf W. Grosse-Kunstleve
ea0c1e77c8 Merge branch 'master' into sh_merge_master 2022-01-11 17:48:37 -08:00
Ralf W. Grosse-Kunstleve
ea4cc147a2 Temporarily backing out all test_class_sh, test_classh additions. 2022-01-11 17:48:05 -08:00
Ivor Wanders
21911e126f
A way to register additional test targets and support .py only tests. (#3590)
* A way to register additional test targets.

* Support specifying tests with extension.

* Ensure TEST_OVERRIDE is backwards compatible.

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Ensure regex is non greedy.

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
2022-01-11 17:31:19 -08:00
Ralf W. Grosse-Kunstleve
f588810871
Replacing ICC C++14 with C++17 (#3570)
* Replacing ICC C++14 with C++17

* ICPC: -diag-disable:conversion

Try to suppress the `-Werror-all` promotion in `#include <variant>`

* Trying `-DPYBIND11_WERROR=OFF`

* Trying `-Wno-conversion` (todo: make specific to C++17 if it works)

* Inserting -Wno-conversion only for C++17

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2022-01-11 12:13:02 -08:00
Ralf W. Grosse-Kunstleve
388c03b18c Merge branch 'master' into sh_merge_master_clean 2021-12-29 13:24:20 -08:00
Ralf W. Grosse-Kunstleve
1bbaeb3462
Adding dedicated test_const_name. (#3578)
* Adding dedicated test_const_name.

Also exercises pybind11::detail::_ backward compatibility.

See also: PR #3423

* Backing out tests involving int_to_str (requires C++17 or higher).

* Suppressing clang-tidy errors.

* Disabling test_const_name for MSVC 2015 due to bizarre failures.

* Stacking @pytest.mark.parametrize (thanks to @skylion007 for pointing out).
2021-12-29 12:54:25 -08:00
Ralf W. Grosse-Kunstleve
e57afe23f7 Merge branch 'master' into smart_holder 2021-11-20 09:35:40 -08:00
Henry Schreiner
15f8d7c12e
fix(build): cleaner CMake printouts & IDE folders (#3479) 2021-11-18 10:01:24 -05:00
Ralf W. Grosse-Kunstleve
4958fd9aa1 Merge branch 'master' into sh_merge_master 2021-10-26 12:10:34 -07:00
Henry Schreiner
e7e2c79f3f
fix: improve support for Python 3.11-dev (#3368)
* ci: support Python 3.11-dev

Also update 3.10 to final, better PyPy usage

* fix: use PyFrame_GetCode on Python 3.9+

* ci: some bitiness of pypy not supported on win

* chore: update CMake support to 3.22rc1 to quiet warning

* fix: use dev version of py to fix Py 3.11

* tests: print proper Eigen version

* ci: include pypy2, not sure why

* ci: avoid running on Python 3.11 for now

* ci: fix runs

* ci: simpler PyPy usage, drop unmaintained scipy + pypy index

* ci: only binary numpy, wait on pypy 3.8

* refactor: address review
2021-10-26 14:50:34 -04:00
Ryan Cahoon
c2d3e220bd
fix: the types for return_value_policy_override in optional_caster (#3376)
* fix: the types for return_value_policy_override in optional_caster

`return_value_policy_override` was not being applied correctly in
`optional_caster` in two ways:
- The `is_lvalue_reference` condition referenced `T`, which was the
`optional<T>` type parameter from the class, when it should have used `T_`,
which was the parameter to the `cast` function. `T_` can potentially be a
reference type, but `T` will never be.
- The type parameter passed to `return_value_policy_override` should be
`T::value_type`, not `T`. This matches the way that the other STL container
type casters work.

The result of these issues was that a method/property definition which used a
`reference` or `reference_internal` return value policy would create a Python
value that's bound by reference to a temporary C++ object, resulting in
undefined behavior. For reasons that I was not able to figure out fully, it
seems like this causes problems when using old versions of `boost::optional`,
but not with recent versions of `boost::optional` or the `libstdc++`
implementation of `std::optional`. The issue (that the override to
`return_value_policy::move` is never being applied) is present for all
implementations, it just seems like that somehow doesn't result in problems for
the some implementation of `optional`. This change includes a regression type
with a custom optional-like type which was able to reproduce the issue.

Part of the issue with using the wrong types may have stemmed from the type
variables `T` and `T_` having very similar names. This also changes the type
variables in `optional_caster` to use slightly more descriptive names, which
also more closely follow the naming convention used by the other STL casters.

Fixes #3330

* Fix clang-tidy complaints

* Add missing NOLINT

* Apply a couple more fixes

* fix: support GCC 4.8

* tests: avoid warning about unknown compiler for compilers missing C++17

* Remove unneeded test module attribute

* Change test enum to have more unique int values

Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
2021-10-25 19:04:45 -07:00
Ralf W. Grosse-Kunstleve
fd68dede10 Merge branch 'master' into sh_merge_master 2021-10-11 13:18:33 -07:00
Ralf W. Grosse-Kunstleve
7c580586f8
Correct options on Eigen::MappedSparseMatrix & adding MSVC C4127 suppression around Eigen includes. (#3352)
* Adding MSVC C4127 suppression around Eigen includes.

* For MSVC 2015 only: also adding the C4127 suppression to test_eigen.cpp

* Copying original change from PR #3343, with extra line breaks to not run past 99 columns (our desired but currently not enforced limit).
2021-10-11 13:13:01 -07:00
Ralf W. Grosse-Kunstleve
5a90dae7fe Merge branch 'master' into smart_holder 2021-10-06 00:47:43 -07:00
Henry Schreiner
d7a7edc12b tests: support Eigen configuration 2021-10-04 10:06:12 -07:00
Ralf W. Grosse-Kunstleve
55fcade987 Merge branch 'master' into sh_merge_master 2021-09-24 12:13:34 -07:00
Jeremy Maitin-Shepard
62c4909cce
Add custom_type_setup attribute (#3287)
* Fix `pybind11::object::operator=` to be safe if `*this` is accessible from Python

* Add `custom_type_setup` attribute

This allows for custom modifications to the PyHeapTypeObject prior to
calling `PyType_Ready`.  This may be used, for example, to define
`tp_traverse` and `tp_clear` functions.
2021-09-24 12:08:22 -07:00
Ralf W. Grosse-Kunstleve
ce62ec56d7 Merge branch 'master' into sh_merge_master 2021-09-12 19:55:42 -07:00
Laramie Leavitt
0e599589fe
Fix thread safety for pybind11 loader_life_support (#3237)
* Fix thread safety for pybind11 loader_life_support

Fixes issue: https://github.com/pybind/pybind11/issues/2765

This converts the vector of PyObjects to either a single void* or
a per-thread void* depending on the WITH_THREAD define.

The new field is used by each thread to construct a stack
of loader_life_support frames that can extend the life of python
objects.

The pointer is updated when the loader_life_support object is allocated
(which happens before a call) as well as on release.

Each loader_life_support maintains a set of PyObject references
that need to be lifetime extended; this is done by storing them
in a c++ std::unordered_set and clearing the references when the
method completes.

* Also update the internals version as the internal struct is no longer compatible

* Add test demonstrating threading works correctly.

It may be appropriate to run this under msan/tsan/etc.

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Update test to use lifetime-extended references rather than
std::string_view, as that's a C++ 17 feature.

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Make loader_life_support members private

* Update version to dev2

* Update test to use python threading rather than concurrent.futures

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Remove unnecessary env in test

* Remove unnecessary pytest in test

* Use native C++ thread_local in place of python per-thread data structures to retain compatability

* clang-format test_thread.cpp

* Add a note about debugging the py::cast() error

* thread_test.py now propagates exceptions on join() calls.

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* remove unused sys / merge

* Update include order in test_thread.cpp

* Remove spurious whitespace

* Update comment / whitespace.

* Address review comments

* lint cleanup

* Fix test IntStruct constructor.

* Add explicit to constructor

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Aaron Gokaslan <skylion.aaron@gmail.com>
2021-09-10 12:29:21 -04:00
Ralf W. Grosse-Kunstleve
663dfb28af Merge branch 'master' into smart_holder 2021-07-28 22:50:18 -07:00
Henry Schreiner
c14b193308
chore: increase CMake upper limit (#3124) 2021-07-28 18:04:14 -07:00
Ralf W. Grosse-Kunstleve
88546fff7d Fixing merge conflict. 2021-07-15 06:23:06 -07:00
Henry Schreiner
cd061aeef1
style: pre-commit cleanup (#3111)
* style: disallow PyTest (should be pytest)

* style: cleanup spell checking a bit

* style: add a few items to the .gitignore
2021-07-14 16:49:13 -04:00
Ralf W. Grosse-Kunstleve
84cbec0bc1 Merge branch 'master' into smart_holder 2021-07-02 07:07:49 -07:00
Antony Lee
5bcaaa0423
Add a std::filesystem::path <-> os.PathLike caster. (#2730) 2021-07-02 07:00:50 -07:00
Ralf W. Grosse-Kunstleve
595f7f4f6e Fixing git rebase -X theirs smart_holder issue. 2021-06-30 07:04:31 -07:00
Ralf W. Grosse-Kunstleve
ef89a43452 Removing experimental code from here. Will be moved to https://github.com/rwgk/rwgk_tbx. 2021-06-30 07:04:31 -07:00
Ralf W. Grosse-Kunstleve
bf8d6a2900 First fully successful attempt to make shared_from_this and trampolines play nicely.
Now also passes the open_spiel iterated_prisoners_dilemma_test ASAN clean, in addition to all pybind11 and PyCLIF unit tests.

The problem was that calling `std::shared_ptr<void>::reset()` with a `void` pointer cannot possibly update the `shared_from_this` `weak_ptr`.

The solution is to store a `shd_ptr_reset` function pointer in `guarded_deleter` (similar in idea to the stored function pointer for calling `delete`).

This commit still includes all debugging code, i.e. is "dirty". The code will be cleaned up after the GitHub CI is fully successful.
2021-06-30 07:04:31 -07:00
Ralf W. Grosse-Kunstleve
28ed5ecce8 Revert "Experiment: commenting out test_class_sh_shared_from_this."
This reverts commit febf9ce949c0bc87a8bf7ab3ddae4deb28636c9d.
2021-06-30 07:04:31 -07:00
Ralf W. Grosse-Kunstleve
6989f174ac Experiment: commenting out test_class_sh_shared_from_this. 2021-06-30 07:04:31 -07:00
Ralf W. Grosse-Kunstleve
e1de4e88b8 Adding test_class_sh_shared_from_this.cpp to tests/CMakeLists.txt. 2021-06-30 07:04:31 -07:00