Seamless operability between C++11 and Python
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Ralf W. Grosse-Kunstleve 2e260b067f
clang-tidy upgrade (to version 18) (#5272)
* `container: silkeh/clang:18-bookworm` in .github/workflows/format.yml

* clang-tidy auto-fix (trivial, in test only)

* Disable `performance-enum-size` (noisy, low value)

* Temporarily turn off 3 diagnostics (to be tackled one-by-one).

* Add explicit `switch` `default` to resolve clang-tidy `bugprone-switch-missing-default-case`

Debian clang version 18.1.8 (++20240718080534+3b5b5c1ec4a3-1~exp1~20240718200641.143)
Target: x86_64-pc-linux-gnu

tests/test_numpy_dtypes.cpp:212:5: warning: switching on non-enum value without default case may not cover all cases [bugprone-switch-missing-default-case]

* Add clang-17 and clang-18 testing.

* Add `NOLINTNEXTLINE(clang-analyzer-optin.core.EnumCastOutOfRange)` in test_tagbased_polymorphic.cpp

Debian clang version 18.1.8 (++20240718080534+3b5b5c1ec4a3-1~exp1~20240718200641.143)
Target: x86_64-pc-linux-gnu

tests/test_tagbased_polymorphic.cpp:77:40: warning: The value '150' provided to the cast expression is not in the valid range of values for 'Kind' [clang-analyzer-optin.core.EnumCastOutOfRange]

* Fix inconsistent pybind11/eigen/tensor.h behavior:

This existing comment in pybind11/eigen/tensor.h

```
                // move, take_ownership don't make any sense for a ref/map:
```

is at odds with the `delete src;` three lines up.

In real-world client code `take_ownership` will not exist (unless the client code is untested and unused). I.e. the `delete` is essentially only useful to avoid leaks in the pybind11 unit tests.

While upgrading to clang-tidy 18, the warning below appeared. Apparently it is produced during LTO, and it appears difficult to suppress. Regardless, the best way to resolve this is to remove the `delete` and to simply make the test objects `static` in the unit test code.

________

Debian clang version 18.1.8 (++20240718080534+3b5b5c1ec4a3-1~exp1~20240718200641.143)
Target: x86_64-pc-linux-gnu
________

```
lto-wrapper: warning: using serial compilation of 3 LTRANS jobs
lto-wrapper: note: see the ‘-flto’ option documentation for more information
In function ‘cast_impl’,
    inlined from ‘cast’ at /mounted_pybind11/include/pybind11/eigen/tensor.h:414:25,
    inlined from ‘operator()’ at /mounted_pybind11/include/pybind11/eigen/../pybind11.h:296:40,
    inlined from ‘_FUN’ at /mounted_pybind11/include/pybind11/eigen/../pybind11.h:267:21:
/mounted_pybind11/include/pybind11/eigen/tensor.h:475:17: warning: ‘operator delete’ called on unallocated object ‘<anonymous>’ [-Wfree-nonheap-object]
  475 |                 delete src;
      |                 ^
/mounted_pybind11/include/pybind11/eigen/../pybind11.h: In function ‘_FUN’:
/mounted_pybind11/include/pybind11/eigen/../pybind11.h:297:75: note: declared here
  297 |                     std::move(args_converter).template call<Return, Guard>(cap->f),
      |                                                                           ^
```

* Disable `bugprone-chained-comparison`: this clang-tidy check is incompatible with the Catch2 `REQUIRE` macro (26 warnings like the one below).
________

Debian clang version 18.1.8 (++20240718080534+3b5b5c1ec4a3-1~exp1~20240718200641.143)
Target: x86_64-pc-linux-gnu
________

```
/mounted_pybind11/tests/test_embed/test_interpreter.cpp:127:9: warning: chained comparison 'v0 <= v1 == v2' may generate unintended results, use parentheses to specify order of evaluation or a logical operator to separate comparison expressions [bugprone-chained-comparison]
  127 |         REQUIRE(ret == 42);
      |         ^
/build/tests/catch/catch.hpp:17670:24: note: expanded from macro 'REQUIRE'
 17670 | #define REQUIRE( ... ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, __VA_ARGS__  )
       |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/tests/catch/catch.hpp:2710:47: note: expanded from macro 'INTERNAL_CATCH_TEST'
 2710 |             catchAssertionHandler.handleExpr( Catch::Decomposer() <= __VA_ARGS__ ); \
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/mounted_pybind11/tests/test_embed/test_interpreter.cpp:127:9: note: operand 'v0' is here
  127 |         REQUIRE(ret == 42);
      |         ^
/build/tests/catch/catch.hpp:17670:24: note: expanded from macro 'REQUIRE'
 17670 | #define REQUIRE( ... ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, __VA_ARGS__  )
       |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/tests/catch/catch.hpp:2710:47: note: expanded from macro 'INTERNAL_CATCH_TEST'
 2710 |             catchAssertionHandler.handleExpr( Catch::Decomposer() <= __VA_ARGS__ ); \
      |                                               ^~~~~~~~~~~~~~~~~~~
/mounted_pybind11/tests/test_embed/test_interpreter.cpp:127:17: note: operand 'v1' is here
  127 |         REQUIRE(ret == 42);
      |                 ^
/build/tests/catch/catch.hpp:17670:90: note: expanded from macro 'REQUIRE'
 17670 | #define REQUIRE( ... ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, __VA_ARGS__  )
       |                                                                                          ^~~~~~~~~~~
/build/tests/catch/catch.hpp:2710:70: note: expanded from macro 'INTERNAL_CATCH_TEST'
 2710 |             catchAssertionHandler.handleExpr( Catch::Decomposer() <= __VA_ARGS__ ); \
      |                                                                      ^~~~~~~~~~~
/mounted_pybind11/tests/test_embed/test_interpreter.cpp:127:24: note: operand 'v2' is here
  127 |         REQUIRE(ret == 42);
      |                        ^
/build/tests/catch/catch.hpp:17670:90: note: expanded from macro 'REQUIRE'
 17670 | #define REQUIRE( ... ) INTERNAL_CATCH_TEST( "REQUIRE", Catch::ResultDisposition::Normal, __VA_ARGS__  )
       |                                                                                          ^~~~~~~~~~~
/build/tests/catch/catch.hpp:2710:70: note: expanded from macro 'INTERNAL_CATCH_TEST'
 2710 |             catchAssertionHandler.handleExpr( Catch::Decomposer() <= __VA_ARGS__ ); \
      |                                                                      ^~~~~~~~~~~
```

* Add 8 `// NOLINT(bugprone-empty-catch)`

* Resolve clang-tidy `bugprone-multi-level-implicit-pointer-conversion` warnings.
________
Debian clang version 18.1.8 (++20240718080534+3b5b5c1ec4a3-1~exp1~20240718200641.143)
Target: x86_64-pc-linux-gnu
________
```
pybind11/detail/internals.h:556:53: warning: multilevel pointer conversion from 'internals **' to 'const void *', please use explicit cast [bugprone-multi-level-implicit-pointer-conversion]

pybind11/detail/type_caster_base.h:431:20: warning: multilevel pointer conversion from 'void **' to 'void *', please use explicit cast [bugprone-multi-level-implicit-pointer-conversion]

pybind11/numpy.h:904:81: warning: multilevel pointer conversion from '_object *const *' to 'const void *', please use explicit cast [bugprone-multi-level-implicit-pointer-conversion]
pybind11/numpy.h:1989:39: warning: multilevel pointer conversion from 'typename vectorize_arg<const double *>::type *' (aka 'const double **') to 'void *', please use explicit cast [bugprone-multi-level-implicit-pointer-conversion]
pybind11/numpy.h:1989:39: warning: multilevel pointer conversion from 'typename vectorize_arg<const VectorizeTestClass *>::type *' (aka 'const VectorizeTestClass **') to 'void *', please use explicit cast [bugprone-multi-level-implicit-pointer-conversion]

pybind11/stl/filesystem.h:75:44: warning: multilevel pointer conversion from 'PyObject **' (aka '_object **') to 'void *', please use explicit cast [bugprone-multi-level-implicit-pointer-conversion]
pybind11/stl/filesystem.h:83:42: warning: multilevel pointer conversion from 'PyObject **' (aka '_object **') to 'void *', please use explicit cast [bugprone-multi-level-implicit-pointer-conversion]
```

* Introduce `PYBIND11_REINTERPRET_CAST_VOID_PTR_IF_NOT_PYPY` to resolve PyPy build errors:

```
In file included from /Users/runner/work/pybind11/pybind11/tests/test_stl.cpp:18:
/Users/runner/work/pybind11/pybind11/include/pybind11/stl/filesystem.h:75:17: error: no matching function for call to 'PyPyUnicode_FSConverter'
            if (PyUnicode_FSConverter(buf, reinterpret_cast<void *>(&native)) != 0) {
                ^~~~~~~~~~~~~~~~~~~~~
/Users/runner/hostedtoolcache/PyPy/3.10.14/x64/include/pypy3.10/pypy_decl.h:969:31: note: expanded from macro 'PyUnicode_FSConverter'
                              ^~~~~~~~~~~~~~~~~~~~~~~
/Users/runner/hostedtoolcache/PyPy/3.10.14/x64/include/pypy3.10/pypy_decl.h:970:17: note: candidate function not viable: cannot convert argument of incomplete type 'void *' to 'struct _object **' for 2nd argument
PyAPI_FUNC(int) PyUnicode_FSConverter(struct _object *arg0, struct _object **arg1);
                ^
/Users/runner/hostedtoolcache/PyPy/3.10.14/x64/include/pypy3.10/pypy_decl.h:969:31: note: expanded from macro 'PyUnicode_FSConverter'
                              ^
In file included from /Users/runner/work/pybind11/pybind11/tests/test_stl.cpp:18:
/Users/runner/work/pybind11/pybind11/include/pybind11/stl/filesystem.h:83:17: error: no matching function for call to 'PyPyUnicode_FSDecoder'
            if (PyUnicode_FSDecoder(buf, reinterpret_cast<void *>(&native)) != 0) {
                ^~~~~~~~~~~~~~~~~~~
/Users/runner/hostedtoolcache/PyPy/3.10.14/x64/include/pypy3.10/pypy_decl.h:971:29: note: expanded from macro 'PyUnicode_FSDecoder'
                            ^~~~~~~~~~~~~~~~~~~~~
/Users/runner/hostedtoolcache/PyPy/3.10.14/x64/include/pypy3.10/pypy_decl.h:972:17: note: candidate function not viable: cannot convert argument of incomplete type 'void *' to 'struct _object **' for 2nd argument
PyAPI_FUNC(int) PyUnicode_FSDecoder(struct _object *arg0, struct _object **arg1);
                ^
/Users/runner/hostedtoolcache/PyPy/3.10.14/x64/include/pypy3.10/pypy_decl.h:971:29: note: expanded from macro 'PyUnicode_FSDecoder'
                            ^
```

* clang-tidy auto-fix

* Fix silly oversight.
2024-07-29 11:10:03 -07:00
.github clang-tidy upgrade (to version 18) (#5272) 2024-07-29 11:10:03 -07:00
docs docs: remove outdated known limitation. (#5263) 2024-07-23 22:32:39 -04:00
include/pybind11 clang-tidy upgrade (to version 18) (#5272) 2024-07-29 11:10:03 -07:00
pybind11 chore: back to work 2024-06-26 00:42:54 -04:00
tests clang-tidy upgrade (to version 18) (#5272) 2024-07-29 11:10:03 -07:00
tools fix(cmake): remove extra = in flto assignment (#5207) 2024-06-27 22:26:09 -04:00
.appveyor.yml feat: remove Python 3.6 support (#5177) 2024-06-22 00:55:00 -04:00
.clang-format Final manual curation in preparation for global clang-formating (#3712) 2022-02-10 11:42:03 -08:00
.clang-tidy clang-tidy upgrade (to version 18) (#5272) 2024-07-29 11:10:03 -07:00
.cmake-format.yaml format: apply cmake-format 2020-07-30 20:27:55 -04:00
.codespell-ignore-lines [pre-commit.ci] pre-commit autoupdate (#4151) 2022-08-29 21:59:48 -07:00
.gitattributes style: pylint (#3720) 2022-02-15 17:48:33 -05:00
.gitignore First draft of Eigen::Tensor support (#4201) 2022-10-18 16:54:16 -07:00
.pre-commit-config.yaml chore(deps): update pre-commit hooks (#5220) 2024-07-01 23:03:52 -07:00
.readthedocs.yml [ci skip] Adopt nanobind config. (#4792) 2023-08-15 07:02:54 -07:00
CMakeLists.txt Small cleanup/refactoring in support of PR #5213 (#5251) 2024-07-18 17:34:06 -07:00
LICENSE docs: contrib/issue templates (#2377) 2020-08-17 10:14:23 -04:00
MANIFEST.in Create s Security Policy (#4671) 2023-05-23 10:05:25 -07:00
noxfile.py chore: prepare for 2.13.0 (#5198) 2024-06-25 23:51:27 -04:00
pyproject.toml feat: remove Python 3.6 support (#5177) 2024-06-22 00:55:00 -04:00
README.rst feat: remove Python 3.6 support (#5177) 2024-06-22 00:55:00 -04:00
SECURITY.md Create s Security Policy (#4671) 2023-05-23 10:05:25 -07:00
setup.cfg docs: prepare for 2.13.0 (#5187) 2024-06-25 16:24:54 -04:00
setup.py feat: remove Python 3.6 support (#5177) 2024-06-22 00:55:00 -04:00

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.. figure:: https://github.com/pybind/pybind11/raw/master/docs/pybind11-logo.png
   :alt: pybind11 logo

**pybind11 — Seamless operability between C++11 and Python**

|Latest Documentation Status| |Stable Documentation Status| |Gitter chat| |GitHub Discussions| |CI| |Build status|

|Repology| |PyPI package| |Conda-forge| |Python Versions|

`Setuptools example <https://github.com/pybind/python_example>`_
• `Scikit-build example <https://github.com/pybind/scikit_build_example>`_
• `CMake example <https://github.com/pybind/cmake_example>`_

.. start


**pybind11** is a lightweight header-only library that exposes C++ types
in Python and vice versa, mainly to create Python bindings of existing
C++ code. Its goals and syntax are similar to the excellent
`Boost.Python <http://www.boost.org/doc/libs/1_58_0/libs/python/doc/>`_
library by David Abrahams: to minimize boilerplate code in traditional
extension modules by inferring type information using compile-time
introspection.

The main issue with Boost.Python—and the reason for creating such a
similar project—is Boost. Boost is an enormously large and complex suite
of utility libraries that works with almost every C++ compiler in
existence. This compatibility has its cost: arcane template tricks and
workarounds are necessary to support the oldest and buggiest of compiler
specimens. Now that C++11-compatible compilers are widely available,
this heavy machinery has become an excessively large and unnecessary
dependency.

Think of this library as a tiny self-contained version of Boost.Python
with everything stripped away that isn't relevant for binding
generation. Without comments, the core header files only require ~4K
lines of code and depend on Python (3.7+, or PyPy) and the C++
standard library. This compact implementation was possible thanks to
some C++11 language features (specifically: tuples, lambda functions and
variadic templates). Since its creation, this library has grown beyond
Boost.Python in many ways, leading to dramatically simpler binding code in many
common situations.

Tutorial and reference documentation is provided at
`pybind11.readthedocs.io <https://pybind11.readthedocs.io/en/latest>`_.
A PDF version of the manual is available
`here <https://pybind11.readthedocs.io/_/downloads/en/latest/pdf/>`_.
And the source code is always available at
`github.com/pybind/pybind11 <https://github.com/pybind/pybind11>`_.


Core features
-------------


pybind11 can map the following core C++ features to Python:

- Functions accepting and returning custom data structures per value,
  reference, or pointer
- Instance methods and static methods
- Overloaded functions
- Instance attributes and static attributes
- Arbitrary exception types
- Enumerations
- Callbacks
- Iterators and ranges
- Custom operators
- Single and multiple inheritance
- STL data structures
- Smart pointers with reference counting like ``std::shared_ptr``
- Internal references with correct reference counting
- C++ classes with virtual (and pure virtual) methods can be extended
  in Python
- Integrated NumPy support (NumPy 2 requires pybind11 2.12+)

Goodies
-------

In addition to the core functionality, pybind11 provides some extra
goodies:

- Python 3.7+, and PyPy3 7.3 are supported with an implementation-agnostic
  interface (pybind11 2.9 was the last version to support Python 2 and 3.5).

- It is possible to bind C++11 lambda functions with captured
  variables. The lambda capture data is stored inside the resulting
  Python function object.

- pybind11 uses C++11 move constructors and move assignment operators
  whenever possible to efficiently transfer custom data types.

- It's easy to expose the internal storage of custom data types through
  Pythons' buffer protocols. This is handy e.g. for fast conversion
  between C++ matrix classes like Eigen and NumPy without expensive
  copy operations.

- pybind11 can automatically vectorize functions so that they are
  transparently applied to all entries of one or more NumPy array
  arguments.

- Python's slice-based access and assignment operations can be
  supported with just a few lines of code.

- Everything is contained in just a few header files; there is no need
  to link against any additional libraries.

- Binaries are generally smaller by a factor of at least 2 compared to
  equivalent bindings generated by Boost.Python. A recent pybind11
  conversion of PyRosetta, an enormous Boost.Python binding project,
  `reported <https://graylab.jhu.edu/Sergey/2016.RosettaCon/PyRosetta-4.pdf>`_
  a binary size reduction of **5.4x** and compile time reduction by
  **5.8x**.

- Function signatures are precomputed at compile time (using
  ``constexpr``), leading to smaller binaries.

- With little extra effort, C++ types can be pickled and unpickled
  similar to regular Python objects.

Supported compilers
-------------------

1. Clang/LLVM 3.3 or newer (for Apple Xcode's clang, this is 5.0.0 or
   newer)
2. GCC 4.8 or newer
3. Microsoft Visual Studio 2017 or newer
4. Intel classic C++ compiler 18 or newer (ICC 20.2 tested in CI)
5. Cygwin/GCC (previously tested on 2.5.1)
6. NVCC (CUDA 11.0 tested in CI)
7. NVIDIA PGI (20.9 tested in CI)

About
-----

This project was created by `Wenzel
Jakob <http://rgl.epfl.ch/people/wjakob>`_. Significant features and/or
improvements to the code were contributed by Jonas Adler, Lori A. Burns,
Sylvain Corlay, Eric Cousineau, Aaron Gokaslan, Ralf Grosse-Kunstleve, Trent Houliston, Axel
Huebl, @hulucc, Yannick Jadoul, Sergey Lyskov, Johan Mabille, Tomasz Miąsko,
Dean Moldovan, Ben Pritchard, Jason Rhinelander, Boris Schäling, Pim
Schellart, Henry Schreiner, Ivan Smirnov, Boris Staletic, and Patrick Stewart.

We thank Google for a generous financial contribution to the continuous
integration infrastructure used by this project.


Contributing
~~~~~~~~~~~~

See the `contributing
guide <https://github.com/pybind/pybind11/blob/master/.github/CONTRIBUTING.md>`_
for information on building and contributing to pybind11.

License
~~~~~~~

pybind11 is provided under a BSD-style license that can be found in the
`LICENSE <https://github.com/pybind/pybind11/blob/master/LICENSE>`_
file. By using, distributing, or contributing to this project, you agree
to the terms and conditions of this license.

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   :target: http://pybind11.readthedocs.org/en/latest
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   :target: https://github.com/conda-forge/pybind11-feedstock
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   :target: https://repology.org/project/python:pybind11/versions
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   :target: https://pypi.org/project/pybind11/
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   :target: https://github.com/pybind/pybind11/discussions