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bc041de0db
* Fix buffer protocol implementation According to the buffer protocol, `ndim` is a _required_ field [1], and should always be set correctly. Additionally, `shape` should be set if flags includes `PyBUF_ND` or higher [2]. The current implementation only set those fields if flags was `PyBUF_STRIDES`. [1] https://docs.python.org/3/c-api/buffer.html#request-independent-fields [2] https://docs.python.org/3/c-api/buffer.html#shape-strides-suboffsets * Apply suggestions from review * Obey contiguity requests for buffer protocol If a contiguous buffer is requested, and the underlying buffer isn't, then that should raise. This matches NumPy behaviour if you do something like: ``` struct.unpack_from('5d', np.arange(20.0)[::4]) # Raises for contiguity ``` Also, if a buffer is contiguous, then it can masquerade as a less-complex buffer, either by dropping strides, or even pretending to be 1D. This matches NumPy behaviour if you do something like: ``` a = np.full((3, 5), 30.0) struct.unpack_from('15d', a) # --> Produces 1D tuple from 2D buffer. ``` * Handle review comments * Test buffer protocol against NumPy * Also check PyBUF_FORMAT results
443 lines
18 KiB
C++
443 lines
18 KiB
C++
/*
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tests/test_buffers.cpp -- supporting Pythons' buffer protocol
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Copyright (c) 2016 Wenzel Jakob <wenzel.jakob@epfl.ch>
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All rights reserved. Use of this source code is governed by a
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BSD-style license that can be found in the LICENSE file.
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*/
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#include <pybind11/complex.h>
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#include <pybind11/stl.h>
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#include "constructor_stats.h"
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#include "pybind11_tests.h"
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TEST_SUBMODULE(buffers, m) {
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m.attr("long_double_and_double_have_same_size") = (sizeof(long double) == sizeof(double));
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m.def("format_descriptor_format_buffer_info_equiv",
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[](const std::string &cpp_name, const py::buffer &buffer) {
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// https://google.github.io/styleguide/cppguide.html#Static_and_Global_Variables
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static auto *format_table = new std::map<std::string, std::string>;
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static auto *equiv_table
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= new std::map<std::string, bool (py::buffer_info::*)() const>;
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if (format_table->empty()) {
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#define PYBIND11_ASSIGN_HELPER(...) \
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(*format_table)[#__VA_ARGS__] = py::format_descriptor<__VA_ARGS__>::format(); \
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(*equiv_table)[#__VA_ARGS__] = &py::buffer_info::item_type_is_equivalent_to<__VA_ARGS__>;
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PYBIND11_ASSIGN_HELPER(PyObject *)
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PYBIND11_ASSIGN_HELPER(bool)
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PYBIND11_ASSIGN_HELPER(std::int8_t)
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PYBIND11_ASSIGN_HELPER(std::uint8_t)
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PYBIND11_ASSIGN_HELPER(std::int16_t)
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PYBIND11_ASSIGN_HELPER(std::uint16_t)
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PYBIND11_ASSIGN_HELPER(std::int32_t)
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PYBIND11_ASSIGN_HELPER(std::uint32_t)
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PYBIND11_ASSIGN_HELPER(std::int64_t)
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PYBIND11_ASSIGN_HELPER(std::uint64_t)
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PYBIND11_ASSIGN_HELPER(float)
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PYBIND11_ASSIGN_HELPER(double)
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PYBIND11_ASSIGN_HELPER(long double)
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PYBIND11_ASSIGN_HELPER(std::complex<float>)
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PYBIND11_ASSIGN_HELPER(std::complex<double>)
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PYBIND11_ASSIGN_HELPER(std::complex<long double>)
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#undef PYBIND11_ASSIGN_HELPER
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}
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return std::pair<std::string, bool>(
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(*format_table)[cpp_name], (buffer.request().*((*equiv_table)[cpp_name]))());
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});
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// test_from_python / test_to_python:
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class Matrix {
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public:
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Matrix(py::ssize_t rows, py::ssize_t cols) : m_rows(rows), m_cols(cols) {
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print_created(this, std::to_string(m_rows) + "x" + std::to_string(m_cols) + " matrix");
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// NOLINTNEXTLINE(cppcoreguidelines-prefer-member-initializer)
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m_data = new float[(size_t) (rows * cols)];
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memset(m_data, 0, sizeof(float) * (size_t) (rows * cols));
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}
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Matrix(const Matrix &s) : m_rows(s.m_rows), m_cols(s.m_cols) {
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print_copy_created(this,
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std::to_string(m_rows) + "x" + std::to_string(m_cols) + " matrix");
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// NOLINTNEXTLINE(cppcoreguidelines-prefer-member-initializer)
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m_data = new float[(size_t) (m_rows * m_cols)];
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memcpy(m_data, s.m_data, sizeof(float) * (size_t) (m_rows * m_cols));
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}
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Matrix(Matrix &&s) noexcept : m_rows(s.m_rows), m_cols(s.m_cols), m_data(s.m_data) {
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print_move_created(this);
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s.m_rows = 0;
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s.m_cols = 0;
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s.m_data = nullptr;
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}
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~Matrix() {
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print_destroyed(this,
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std::to_string(m_rows) + "x" + std::to_string(m_cols) + " matrix");
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delete[] m_data;
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}
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Matrix &operator=(const Matrix &s) {
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if (this == &s) {
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return *this;
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}
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print_copy_assigned(this,
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std::to_string(m_rows) + "x" + std::to_string(m_cols) + " matrix");
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delete[] m_data;
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m_rows = s.m_rows;
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m_cols = s.m_cols;
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m_data = new float[(size_t) (m_rows * m_cols)];
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memcpy(m_data, s.m_data, sizeof(float) * (size_t) (m_rows * m_cols));
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return *this;
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}
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Matrix &operator=(Matrix &&s) noexcept {
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print_move_assigned(this,
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std::to_string(m_rows) + "x" + std::to_string(m_cols) + " matrix");
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if (&s != this) {
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delete[] m_data;
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m_rows = s.m_rows;
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m_cols = s.m_cols;
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m_data = s.m_data;
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s.m_rows = 0;
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s.m_cols = 0;
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s.m_data = nullptr;
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}
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return *this;
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}
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float operator()(py::ssize_t i, py::ssize_t j) const {
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return m_data[(size_t) (i * m_cols + j)];
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}
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float &operator()(py::ssize_t i, py::ssize_t j) {
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return m_data[(size_t) (i * m_cols + j)];
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}
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float *data() { return m_data; }
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py::ssize_t rows() const { return m_rows; }
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py::ssize_t cols() const { return m_cols; }
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private:
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py::ssize_t m_rows;
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py::ssize_t m_cols;
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float *m_data;
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};
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py::class_<Matrix>(m, "Matrix", py::buffer_protocol())
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.def(py::init<py::ssize_t, py::ssize_t>())
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/// Construct from a buffer
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.def(py::init([](const py::buffer &b) {
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py::buffer_info info = b.request();
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if (info.format != py::format_descriptor<float>::format() || info.ndim != 2) {
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throw std::runtime_error("Incompatible buffer format!");
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}
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auto *v = new Matrix(info.shape[0], info.shape[1]);
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memcpy(v->data(), info.ptr, sizeof(float) * (size_t) (v->rows() * v->cols()));
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return v;
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}))
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.def("rows", &Matrix::rows)
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.def("cols", &Matrix::cols)
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/// Bare bones interface
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.def("__getitem__",
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[](const Matrix &m, std::pair<py::ssize_t, py::ssize_t> i) {
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if (i.first >= m.rows() || i.second >= m.cols()) {
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throw py::index_error();
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}
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return m(i.first, i.second);
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})
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.def("__setitem__",
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[](Matrix &m, std::pair<py::ssize_t, py::ssize_t> i, float v) {
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if (i.first >= m.rows() || i.second >= m.cols()) {
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throw py::index_error();
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}
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m(i.first, i.second) = v;
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})
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/// Provide buffer access
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.def_buffer([](Matrix &m) -> py::buffer_info {
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return py::buffer_info(
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m.data(), /* Pointer to buffer */
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{m.rows(), m.cols()}, /* Buffer dimensions */
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{sizeof(float) * size_t(m.cols()), /* Strides (in bytes) for each index */
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sizeof(float)});
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});
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// A matrix that uses Fortran storage order.
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class FortranMatrix : public Matrix {
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public:
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FortranMatrix(py::ssize_t rows, py::ssize_t cols) : Matrix(cols, rows) {
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print_created(this,
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std::to_string(rows) + "x" + std::to_string(cols) + " Fortran matrix");
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}
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float operator()(py::ssize_t i, py::ssize_t j) const { return Matrix::operator()(j, i); }
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float &operator()(py::ssize_t i, py::ssize_t j) { return Matrix::operator()(j, i); }
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using Matrix::data;
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py::ssize_t rows() const { return Matrix::cols(); }
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py::ssize_t cols() const { return Matrix::rows(); }
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};
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py::class_<FortranMatrix, Matrix>(m, "FortranMatrix", py::buffer_protocol())
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.def(py::init<py::ssize_t, py::ssize_t>())
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.def("rows", &FortranMatrix::rows)
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.def("cols", &FortranMatrix::cols)
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/// Bare bones interface
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.def("__getitem__",
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[](const FortranMatrix &m, std::pair<py::ssize_t, py::ssize_t> i) {
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if (i.first >= m.rows() || i.second >= m.cols()) {
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throw py::index_error();
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}
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return m(i.first, i.second);
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})
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.def("__setitem__",
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[](FortranMatrix &m, std::pair<py::ssize_t, py::ssize_t> i, float v) {
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if (i.first >= m.rows() || i.second >= m.cols()) {
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throw py::index_error();
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}
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m(i.first, i.second) = v;
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})
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/// Provide buffer access
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.def_buffer([](FortranMatrix &m) -> py::buffer_info {
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return py::buffer_info(m.data(), /* Pointer to buffer */
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{m.rows(), m.cols()}, /* Buffer dimensions */
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/* Strides (in bytes) for each index */
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{sizeof(float), sizeof(float) * size_t(m.rows())});
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});
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// A matrix that uses a discontiguous underlying memory block.
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class DiscontiguousMatrix : public Matrix {
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public:
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DiscontiguousMatrix(py::ssize_t rows,
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py::ssize_t cols,
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py::ssize_t row_factor,
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py::ssize_t col_factor)
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: Matrix(rows * row_factor, cols * col_factor), m_row_factor(row_factor),
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m_col_factor(col_factor) {
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print_created(this,
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std::to_string(rows) + "(*" + std::to_string(row_factor) + ")x"
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+ std::to_string(cols) + "(*" + std::to_string(col_factor)
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+ ") matrix");
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}
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~DiscontiguousMatrix() {
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print_destroyed(this,
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std::to_string(rows() / m_row_factor) + "(*"
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+ std::to_string(m_row_factor) + ")x"
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+ std::to_string(cols() / m_col_factor) + "(*"
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+ std::to_string(m_col_factor) + ") matrix");
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}
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float operator()(py::ssize_t i, py::ssize_t j) const {
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return Matrix::operator()(i * m_row_factor, j * m_col_factor);
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}
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float &operator()(py::ssize_t i, py::ssize_t j) {
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return Matrix::operator()(i * m_row_factor, j * m_col_factor);
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}
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using Matrix::data;
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py::ssize_t rows() const { return Matrix::rows() / m_row_factor; }
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py::ssize_t cols() const { return Matrix::cols() / m_col_factor; }
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py::ssize_t row_factor() const { return m_row_factor; }
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py::ssize_t col_factor() const { return m_col_factor; }
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private:
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py::ssize_t m_row_factor;
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py::ssize_t m_col_factor;
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};
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py::class_<DiscontiguousMatrix, Matrix>(m, "DiscontiguousMatrix", py::buffer_protocol())
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.def(py::init<py::ssize_t, py::ssize_t, py::ssize_t, py::ssize_t>())
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.def("rows", &DiscontiguousMatrix::rows)
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.def("cols", &DiscontiguousMatrix::cols)
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/// Bare bones interface
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.def("__getitem__",
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[](const DiscontiguousMatrix &m, std::pair<py::ssize_t, py::ssize_t> i) {
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if (i.first >= m.rows() || i.second >= m.cols()) {
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throw py::index_error();
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}
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return m(i.first, i.second);
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})
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.def("__setitem__",
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[](DiscontiguousMatrix &m, std::pair<py::ssize_t, py::ssize_t> i, float v) {
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if (i.first >= m.rows() || i.second >= m.cols()) {
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throw py::index_error();
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}
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m(i.first, i.second) = v;
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})
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/// Provide buffer access
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.def_buffer([](DiscontiguousMatrix &m) -> py::buffer_info {
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return py::buffer_info(m.data(), /* Pointer to buffer */
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{m.rows(), m.cols()}, /* Buffer dimensions */
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/* Strides (in bytes) for each index */
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{size_t(m.col_factor()) * sizeof(float) * size_t(m.cols())
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* size_t(m.row_factor()),
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size_t(m.col_factor()) * sizeof(float)});
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});
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class BrokenMatrix : public Matrix {
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public:
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BrokenMatrix(py::ssize_t rows, py::ssize_t cols) : Matrix(rows, cols) {}
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void throw_runtime_error() { throw std::runtime_error("See PR #5324 for context."); }
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};
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py::class_<BrokenMatrix>(m, "BrokenMatrix", py::buffer_protocol())
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.def(py::init<py::ssize_t, py::ssize_t>())
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.def_buffer([](BrokenMatrix &m) {
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m.throw_runtime_error();
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return py::buffer_info();
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});
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// test_inherited_protocol
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class SquareMatrix : public Matrix {
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public:
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explicit SquareMatrix(py::ssize_t n) : Matrix(n, n) {}
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};
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// Derived classes inherit the buffer protocol and the buffer access function
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py::class_<SquareMatrix, Matrix>(m, "SquareMatrix").def(py::init<py::ssize_t>());
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// test_pointer_to_member_fn
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// Tests that passing a pointer to member to the base class works in
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// the derived class.
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struct Buffer {
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int32_t value = 0;
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py::buffer_info get_buffer_info() {
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return py::buffer_info(
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&value, sizeof(value), py::format_descriptor<int32_t>::format(), 1);
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}
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};
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py::class_<Buffer>(m, "Buffer", py::buffer_protocol())
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.def(py::init<>())
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.def_readwrite("value", &Buffer::value)
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.def_buffer(&Buffer::get_buffer_info);
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class ConstBuffer {
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std::unique_ptr<int32_t> value;
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public:
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int32_t get_value() const { return *value; }
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void set_value(int32_t v) { *value = v; }
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py::buffer_info get_buffer_info() const {
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return py::buffer_info(
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value.get(), sizeof(*value), py::format_descriptor<int32_t>::format(), 1);
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}
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ConstBuffer() : value(new int32_t{0}) {}
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};
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py::class_<ConstBuffer>(m, "ConstBuffer", py::buffer_protocol())
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.def(py::init<>())
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.def_property("value", &ConstBuffer::get_value, &ConstBuffer::set_value)
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.def_buffer(&ConstBuffer::get_buffer_info);
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struct DerivedBuffer : public Buffer {};
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py::class_<DerivedBuffer>(m, "DerivedBuffer", py::buffer_protocol())
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.def(py::init<>())
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.def_readwrite("value", (int32_t DerivedBuffer::*) &DerivedBuffer::value)
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.def_buffer(&DerivedBuffer::get_buffer_info);
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struct BufferReadOnly {
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const uint8_t value = 0;
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explicit BufferReadOnly(uint8_t value) : value(value) {}
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py::buffer_info get_buffer_info() { return py::buffer_info(&value, 1); }
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};
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py::class_<BufferReadOnly>(m, "BufferReadOnly", py::buffer_protocol())
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.def(py::init<uint8_t>())
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.def_buffer(&BufferReadOnly::get_buffer_info);
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struct BufferReadOnlySelect {
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uint8_t value = 0;
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bool readonly = false;
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py::buffer_info get_buffer_info() { return py::buffer_info(&value, 1, readonly); }
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};
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py::class_<BufferReadOnlySelect>(m, "BufferReadOnlySelect", py::buffer_protocol())
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.def(py::init<>())
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.def_readwrite("value", &BufferReadOnlySelect::value)
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.def_readwrite("readonly", &BufferReadOnlySelect::readonly)
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.def_buffer(&BufferReadOnlySelect::get_buffer_info);
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// Expose buffer_info for testing.
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py::class_<py::buffer_info>(m, "buffer_info")
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.def(py::init<>())
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.def_readonly("itemsize", &py::buffer_info::itemsize)
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.def_readonly("size", &py::buffer_info::size)
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.def_readonly("format", &py::buffer_info::format)
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.def_readonly("ndim", &py::buffer_info::ndim)
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.def_readonly("shape", &py::buffer_info::shape)
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.def_readonly("strides", &py::buffer_info::strides)
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.def_readonly("readonly", &py::buffer_info::readonly)
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.def("__repr__", [](py::handle self) {
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return py::str("itemsize={0.itemsize!r}, size={0.size!r}, format={0.format!r}, "
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"ndim={0.ndim!r}, shape={0.shape!r}, strides={0.strides!r}, "
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"readonly={0.readonly!r}")
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.format(self);
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});
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m.def("get_buffer_info", [](const py::buffer &buffer) { return buffer.request(); });
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// Expose Py_buffer for testing.
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m.attr("PyBUF_FORMAT") = PyBUF_FORMAT;
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m.attr("PyBUF_SIMPLE") = PyBUF_SIMPLE;
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m.attr("PyBUF_ND") = PyBUF_ND;
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m.attr("PyBUF_STRIDES") = PyBUF_STRIDES;
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m.attr("PyBUF_INDIRECT") = PyBUF_INDIRECT;
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m.attr("PyBUF_C_CONTIGUOUS") = PyBUF_C_CONTIGUOUS;
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m.attr("PyBUF_F_CONTIGUOUS") = PyBUF_F_CONTIGUOUS;
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m.attr("PyBUF_ANY_CONTIGUOUS") = PyBUF_ANY_CONTIGUOUS;
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m.def("get_py_buffer", [](const py::object &object, int flags) {
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Py_buffer buffer;
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memset(&buffer, 0, sizeof(Py_buffer));
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if (PyObject_GetBuffer(object.ptr(), &buffer, flags) == -1) {
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throw py::error_already_set();
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}
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auto SimpleNamespace = py::module_::import("types").attr("SimpleNamespace");
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py::object result = SimpleNamespace("len"_a = buffer.len,
|
|
"readonly"_a = buffer.readonly,
|
|
"itemsize"_a = buffer.itemsize,
|
|
"format"_a = buffer.format,
|
|
"ndim"_a = buffer.ndim,
|
|
"shape"_a = py::none(),
|
|
"strides"_a = py::none(),
|
|
"suboffsets"_a = py::none());
|
|
if (buffer.shape != nullptr) {
|
|
py::list l;
|
|
for (auto i = 0; i < buffer.ndim; i++) {
|
|
l.append(buffer.shape[i]);
|
|
}
|
|
py::setattr(result, "shape", l);
|
|
}
|
|
if (buffer.strides != nullptr) {
|
|
py::list l;
|
|
for (auto i = 0; i < buffer.ndim; i++) {
|
|
l.append(buffer.strides[i]);
|
|
}
|
|
py::setattr(result, "strides", l);
|
|
}
|
|
if (buffer.suboffsets != nullptr) {
|
|
py::list l;
|
|
for (auto i = 0; i < buffer.ndim; i++) {
|
|
l.append(buffer.suboffsets[i]);
|
|
}
|
|
py::setattr(result, "suboffsets", l);
|
|
}
|
|
|
|
PyBuffer_Release(&buffer);
|
|
return result;
|
|
});
|
|
}
|