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Author SHA1 Message Date
Ralf W. Grosse-Kunstleve
484b0f0433
Updating and slightly enhancing instructions for running clang-tidy. (#3055) 
* Updating and slightly enhancing instructions for running clang-tidy.

* Making documented commands identical to workflow commands. Adding comment in workflow file pointing to documentation.
 2021-06-22 15:12:58 -07:00
Aaron Gokaslan
dac74ebdf5
fix(clang-tidy): performance fixes applied in tests and CI (#3051) 
* Initial fixes

* Whoops

* Finish clang-tidy manual fixes

* Add two missing fixes

* Revert

* Update clang-tidy

* Try to fix unreachable code error

* Move nolint comment

* Apply missing fix

* Don't override clang-tidy config

* Does this fix clang-tidy?

* Make all clang-tidy errors visible

* Add comments about NOLINTs and remove a few

* Fix typo
 2021-06-22 12:11:54 -04:00
Aaron Gokaslan
3b30b0a51e
fix(clang-tidy): clang-tidy readability and misc fixes, like adding const (#3052) 
* Enable and apply clang-tidy readability and misc fixes.

* Revert deprecated tester

* add space to tests/test_constants_and_functions.cpp
 2021-06-21 10:37:48 -04:00
Robert Schütz
d00fc62931
use CMAKE_INSTALL_FULL_INCLUDEDIR (#3005) 2021-06-19 18:45:53 -04:00
dependabot[bot]
9b3b357706
chore(deps): bump ilammy/msvc-dev-cmd from 1.8.1 to 1.9.0 (#3027) 2021-06-19 18:39:54 -04:00
Aaron Gokaslan
e0b5cbd4c6
chore(clang-tidy): add more modernize clang-tidy checks (#3049) 
* Add more modernize clang-tidy checks

* Enable a few more
 2021-06-19 18:38:56 -04:00
Aaron Gokaslan
af6218ff78
fix(clang-tidy): Apply performance fixes from clang-tidy (#3046) 
* Apply performance fixes from clang-tidy

* 2nd Round of Perf Optimizations

* 3rd round of fixes & handle false-positive

* Apply missing fix and clang-format

* Apply reviewer comment
 2021-06-19 10:53:27 -07:00
jbarlow83
79178e713d
fix(setup_helpers): try import multiprocessing.synchronize too (#3043) 2021-06-18 10:17:34 -04:00
Ralf W. Grosse-Kunstleve
19d99a87fe
Working around Centos 8 failure. (#3030) 
* Experiment using -DCMAKE_BUILD_TYPE=Debug for Centos 8.

* Moving comment because the current placement seems to mess up the cmake command.

* Using `echo > VAR_XXX` and `$(cat VAR_XXX)` trick to emulate using variables (https://github.com/actions/starter-workflows/issues/68#issuecomment-524937002).
 2021-06-18 01:35:36 -07:00
Aaron Gokaslan
b4b67f026b
Fix typos (#3044) 2021-06-17 13:39:59 -07:00
Aaron Gokaslan
cd4b49a2c8
Update py::kwargs examples to pass by reference (#3038) 2021-06-17 13:20:17 -07:00
Jack S. Hale
4c7697dbe9
Add const T to docstring generation. (#3020) 
* Add const T to docstring generation.

* Change order.

* See if existing test triggers for a const type.

* Add tests.

* Fix test.

* Remove experiment.

* Reformat.

* More tests, checks run.

* Adding `test_fmt_desc_` prefix to new test functions.

* Using pytest.mark.parametrize to 1. condense test; 2. exercise all functions even if one fails; 3. be less platform-specific (e.g. C++ float is not necessarily float32).

Co-authored-by: Ralf W. Grosse-Kunstleve <rwgk@google.com>
 2021-06-08 11:56:45 -07:00
Ralf W. Grosse-Kunstleve
e25b1505db
Adjusting valgrind suppression for pypocketfft to resolve systematic failures that started to appear on 2020-05-27. (#3022) 2021-05-27 12:51:46 -07:00
Yichen
3ac690b88b
Explicitly export exception types. (#2999) 
* Set visibility of exceptions to default.

Co-authored-by: XZiar <czktc2007@gmail.com>

* add test

* update docs

* Skip failed test.
 2021-05-27 08:00:18 -07:00
dependabot[bot]
14023c9cda
chore(deps): bump ilammy/msvc-dev-cmd from 1.8.0 to 1.8.1 (#3021) 2021-05-27 06:10:28 +00:00
dependabot[bot]
f61855b9d8
chore(deps): bump ilammy/msvc-dev-cmd from 1 to 1.8.0 (#3001) 2021-05-13 23:21:13 -04:00
dependabot[bot]
bc7cf6ef17
chore(deps): bump jwlawson/actions-setup-cmake from 1.8 to 1.9 (#3000) 2021-05-13 23:19:51 -04:00
Eric Cousineau
b6ec0e950c
functions: Add doc on incorrect argument index (#2979) 
test_call_policies: Explicitly check free-functions and static methods
 2021-05-06 10:13:30 -04:00
Akira Kawata
417fd120cc
Fix: fix typo of WITHOUT_SOABI (#2992) 2021-05-06 00:19:05 -07:00
Pieter P
0c93a0f3fc
Fix Unicode support for ostream redirects (#2982) 
* Crash when printing Unicode to redirected cout
Add failing tests

* Fix Unicode crashes redirected cout

* pythonbuf::utf8_remainder check end iterator

* Remove trailing whitespace and formatting iostream

* Avoid buffer overflow if ostream redirect races
This doesn't solve the actual race, but at least it now has a much lower
probability of reading past the end of the buffer even when data races
do occur.
 2021-05-03 22:04:38 -07:00
Henry Schreiner
54430436fe
ci: install Boost for boost checks (#2968) 2021-04-22 00:03:07 -04:00
dependabot[bot]
bca4b36ba7
chore(deps): bump pre-commit/action from v2.0.2 to v2.0.3 (#2964) 
Bumps [pre-commit/action](https://github.com/pre-commit/action) from v2.0.2 to v2.0.3.
- [Release notes](https://github.com/pre-commit/action/releases)
- [Commits](https://github.com/pre-commit/action/compare/v2.0.2...9b88afc9cd57fd75b655d5c71bd38146d07135fe)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2021-04-21 15:00:00 -04:00
Henry Schreiner
5e4804bb66
tests: use master commit for pytest on 3.10 (#2967) 2021-04-21 13:30:01 -04:00
mvoelkle-cern
e08a58111d
Fix compilation with gcc < 5 (#2956) 
When the user defines _GLIBCXX_USE_CXX11_ABI=0 to force the pre-c++11 ABI, numpy.h assumes that is_trivially_copyable is available.
It is not necessarily the case. This patch uses clang's feature detection instead.
The workaround is for certain libstdc++ versions, so the test should target these particular versions.
 2021-04-19 13:53:57 -04:00
Henry Schreiner
114be7f4ad
docs: remove recommonmark (#2955) 2021-04-15 18:27:16 -04:00
Philipp Bucher
62976cfcb8
fix: using -Werror-all for Intel (#2948) 
* correcting Werror for Intel

* adding ward for Intel

* adding wards for intel

* another ward for Intel

* missed one intel ward

* exact match for intel compiler

* removing inline limits

* disable warnings about inline limits

* formatter suggestion

* more indent

* hopefully make formatter happy

* addressed review

* fix &&

* Update tests/CMakeLists.txt

Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>

Co-authored-by: Henry Schreiner <HenrySchreinerIII@gmail.com>
 2021-04-14 14:01:27 -04:00
Tamaki Nishino
6709abba93
Allow function pointer extraction from overloaded functions (#2944) 
* Add a failure test for overloaded functions

* Allow function pointer extraction from overloaded functions
 2021-04-13 16:53:56 -07:00
Henry Schreiner
e0c1dadb75
chore: add myself to CODEOWNERS (#2940) 
* chore: add myself to CODEOWNERS

This will ensure I get notified about pull requests where these files change.

* Update .github/CODEOWNERS
 2021-04-10 11:12:56 -04:00
Weiming Zhao
4f0727f280
Fix the enabling of default extension handling (#2938) 2021-04-05 23:50:50 -04:00
dependabot[bot]
16c23fef31
chore(deps): bump pre-commit/action from v2.0.0 to v2.0.2 (#2935) 2021-04-05 22:53:59 -04:00
Ralf W. Grosse-Kunstleve
ad6bf5cd39
Adding PyGILState_Check() in object_api<>::operator(). (#2919) 
* Adding PyGILState_Check() in object_api<>::operator().

* Enabling PyGILState_Check() for Python >= 3.6 only.

Possibly, this explains why PyGILState_Check() cannot safely be used with Python 3.4 and 3.5:

https://github.com/python/cpython/pull/10267#issuecomment-434881587

* Adding simple micro benchmark.

* Reducing test time to minimum (purely for coverage, not for accurate results).

* Fixing silly oversight.

* Minor code organization improvement in test.

* Adding example runtimes.

* Removing capsys (just run with `-k test_callback_num_times -s` and using `.format()`.
 2021-04-02 18:17:12 -07:00
Eric Cousineau
f676782bec
env: Add surrogate for pytest.deprecated_call for ptyest<3.9 (#2923) 
env: Add surrogate for pytest.deprecated_call for ptyest<3.9
 2021-04-02 14:34:09 -04:00
Jerome Robert
1259db6fd9
Fix Pybind11Extension on mingw64 (#2921) 
* Pybind11Extension add the "/EHsc /bigobj /std:c++14" flags on Windows.
  This is good for Visual C++ but not for Mingw.
* According
  https://github.com/msys2/MINGW-packages/blob/master/mingw-w64-python2/0410-MINGW-build-extensions-with-GCC.patch
  sysconfig.get_platform() is the way to check for a Mingw64
 2021-04-02 10:26:17 -07:00
Robert Haschke
c2db53da56
fix: catch missing self argument in overloads constructor (#2914) 2021-04-02 13:13:44 -04:00
JYX
3df0ee6fe3
docs: typo in classes.rst (#2926) 2021-04-02 11:46:43 -04:00
Ralf W. Grosse-Kunstleve
0e01c243c7
Generalizing suppression for pypocketfft. (#2896) 
* Adding suppression for pypocketfft.

* Generalize existing pypocketfft Valgrind suppression

Co-authored-by: Yannick Jadoul <yannick.jadoul@belgacom.net>
 2021-03-09 15:07:44 -08:00
Boris Staletic
f110889dde
Use correct duration representation when casting from datetime.timdelta to std::chrono::duration (#2870) 
* Use correct duration representation when casting from datetime.timdelta to std::chrono::duration

* When asserting datetime/timedelta/date/time we can equality-compare whole objects
 2021-03-07 23:42:01 -08:00
Ralf W. Grosse-Kunstleve
44678e5476
Shuffling code in test_multiple_inheritance.cpp to separate struct/class definitions from bindings code. (#2890) 2021-03-05 17:45:57 -05:00
Tom de Geus
9c0aa69937
Pointing out namespace in docs (#2874) 2021-02-25 07:25:50 -08:00
Ralf W. Grosse-Kunstleve
e2e819b2d8
Shuffling code in test_smart_ptr.cpp to separate struct/class definitions from bindings code. Back-porting from smart_holder branch, to minimize diffs and potential for merge conflicts. (#2875) 
Thanks Wenzel!
 2021-02-25 07:10:26 -08:00
Bertrand MICHEL
74a767d429
Dtype kind vs char (#2864) 
* [dtype]: add type() method to access type attribute of PyArray_Descr (eq. to dtype.char in Python)

* [dtype] change type() name method to char_() to be compliant with Python numpy interface

* [dtype] fix by pre-commit

* [dtype] Change comments and solutions format for test

* Clarify documentation and move note about dtype.char vs PyArray_Descr::type to a plain, non-doxygen comment

* Fix and extend tests

* Fix the supposedly fixed tests

* Fix the fixed tests again

Co-authored-by: Bertrand MICHEL <bertrand.michel@onera.fr>
Co-authored-by: Yannick Jadoul <yannick.jadoul@belgacom.net>
 2021-02-23 10:57:28 +01:00
Dustin Spicuzza
c0fbb02c9f
Extract gil management functions to separate header (#2845) 2021-02-22 19:15:40 -08:00
Ralf W. Grosse-Kunstleve
0c42250a4e
Splitting out detail/type_caster_base.h from cast.h, with iwyu cleanup. (#2841) 
* Splitting out detail/type_caster_base.h from cast.h.
* Include cleanup guided by include-what-you-use 0.12 based on clang version 9.0.1-11.
 2021-02-22 18:38:18 -08:00
jakobjw
98f9a33c62
Correct typo in FAQ (#2868) 2021-02-20 23:28:27 +01:00
dependabot[bot]
59f8d7f1bf
chore(deps): bump jwlawson/actions-setup-cmake from v1.7 to v1.8 (#2865) 2021-02-17 18:48:37 +00:00
Vikram Pal
417067eeb8
Add pybind11::bytearray (#2799) 
* Add initial implementation

* Add few more methods

* Add tests

* Fix a typo

* Use std::string constructor which takes size

* Fix implicit sign conversion error

* Add size method and test

* Remove implicit conversion

* Fix bytearray constructors and operator std::string()

* Make implicit bytearray constructor explicit

* Rerun tests

* Add null check

* Rerun tests

* Rerun tests - 2

* Remove NULL check
 2021-02-14 15:51:13 +01:00
OnlineCop
cbae6d55c2
docs: fix CMake status for DOWNLOAD_EIGEN (#2857) 
Co-authored-by: OnlineCop <onlinecop@gmail.com>
 2021-02-12 17:11:23 -05:00
dependabot[bot]
c236239356
chore(deps): bump pypa/gh-action-pypi-publish from v1.4.1 to v1.4.2 (#2851) 
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from v1.4.1 to v1.4.2.
- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases)
- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.4.1...27b31702a0e7fc50959f5ad993c78deac1bdfc29)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2021-02-09 17:00:16 -05:00
Axel Huebl
c78dfb69f2
MSVC but not Clang: /MP (#2824) 
On Windows, clang-cl does not understand /MP.
```
clang-cl: warning: argument unused during compilation: '/MP' [-Wunused-command-line-argument]
```
with Clang 10.0.0
 2021-02-08 15:40:04 -05:00
Karthik Nishanth
e791ec4e27
fix: add null pointer check with std::localtime (#2846) 2021-02-08 15:38:22 -05:00